Solyc05g055030.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc05g055030.1 T280138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.738 0.796
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.738 0.796
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.737 0.785
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.737 0.785
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.734 0.806
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.734 0.806
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.734 0.806
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.734 0.806
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.699 0.785
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.699 0.785
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.696 0.699
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.696 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g055030.1.1 Myb 14 61
Solyc05g055030.1.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

398 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_07993 Phytophthora parasitica F443_07993 N 0.000
fgenesh_scip_prom.28083.11830 Phytophthora lateralis fgenesh_scip_prom.28083.11830 N 0.000
fgenesh_scip_prom.46568.2763 Phytophthora kernoviae fgenesh_scip_prom.46568.2763 N 0.000
HpaG809699 Hyaloperonospora arabidopsidis HpaG809699 N 0.000
maker-pve_contig_664-snap-gene-0.9 Pythium vexans maker-pve_contig_664-snap-gene-0.9 N 0.000
Phyra93231 Phytophthora ramorum Phyra93231 N 0.000
PITG_00215 Phytophthora infestans PITG_00215 N 0.000
snap_masked-par_contig_517-abinit-gene-0.15 Pythium arrhenomanes snap_masked-par_contig_517-abinit-gene-0.15 N 0.000