Pm012998 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm012998 T283521_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.830 0.870
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.830 0.870
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.830 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.817 0.870
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.801 0.848
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.792 0.804
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.792 0.804
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.756 0.826
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.756 0.826
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.727 0.761
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.727 0.761
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.727 0.761
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.727 0.761
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.727 0.761
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.685 0.674
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.685 0.674
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.685 0.674
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.679 0.696
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.679 0.696
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.679 0.696
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.679 0.674
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.679 0.674
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.679 0.674
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.669 0.652
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.669 0.652
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.669 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm012998 Myb 66 111

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_76 Arabidopsis lyrata Al_scaffold_0007_76 I 0.000
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
BGIOSGA011761 Oryza indica BGIOSGA011761 N 0.000
BGIOSGA029105 Oryza indica BGIOSGA029105 I 0.000
BGIOSGA029106 Oryza indica BGIOSGA029106 I 0.000
Bo3g149620 Brassica oleracea Bo3g149620 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N 0.000
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N 0.000
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I 0.000
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I 0.000
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N 0.000
Carubv10004500m.g Capsella rubella Carubv10004500m.g N 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I 0.000
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
evm.TU.supercontig_81.160 Carica papaya evm.TU.supercontig_81.160 I 0.000
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I 0.000
F775_32059 Aegilops tauschii F775_32059 I 0.000
F775_33214 Aegilops tauschii F775_33214 N 0.000
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I 0.000
GLYMA04G02850 Glycine max GLYMA04G02850 I 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I 0.000
GRMZM2G353553 Zea mays GRMZM2G353553 N 0.000
GRMZM2G428184 Zea mays GRMZM2G428184 N 0.000
GRMZM2G473274 Zea mays GRMZM2G473274 N 0.000
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I 0.000
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I 0.000
GSMUA_Achr8G12090_001 Musa acuminata GSMUA_Achr8G12090_001 I 0.000
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I 0.000
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I 0.000
LPERR03G02000 Leersia perrieri LPERR03G02000 N 0.000
LPERR10G12670 Leersia perrieri LPERR10G12670 N 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
MLOC_10725 Hordeum vulgare MLOC_10725 N 0.000
MLOC_64362 Hordeum vulgare MLOC_64362 I 0.000
MLOC_66865 Hordeum vulgare MLOC_66865 N 0.000
MLOC_75510 Hordeum vulgare MLOC_75510 I 0.000
MTR_1g023690 Medicago truncatula MTR_1g023690 N 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
OB03G12130 Oryza brachyantha OB03G12130 N 0.000
OB10G23730 Oryza brachyantha OB10G23730 N 0.000
OBART03G02190 Oryza barthii OBART03G02190 N 0.000
OGLUM03G02140 Oryza glumaepatula OGLUM03G02140 N 0.000
OLONG_011520 Oryza longistaminata OLONG_011520 N 0.000
OLONG_016151 Oryza longistaminata OLONG_016151 N 0.000
OMERI03G02030 Oryza meridionalis OMERI03G02030 N 0.000
ONIVA03G01800 Oryza nivara ONIVA03G01800 N 0.000
OPUNC10G15060 Oryza punctata OPUNC10G15060 N 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
ORGLA03G0019600 Oryza glaberrima ORGLA03G0019600 N 0.000
ORUFI03G01930 Oryza rufipogon ORUFI03G01930 N 0.000
OS03G0127500 Oryza sativa OS03G0127500 N 0.000
OS10G0531900 Oryza sativa OS10G0531900 N 0.000
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N 0.000
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N 0.000
Pavir.J19159 Panicum virgatum Pavir.J19159 N 0.000
Pavir.J22781 Panicum virgatum Pavir.J22781 N 0.000
Pavir.J29906 Panicum virgatum Pavir.J29906 N 0.000
PDK_20s1312701g003 Phoenix dactylifera PDK_20s1312701g003 I 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
PK00843.1 Cannabis sativa PK00843.1 I 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
Sb01g030770 Sorghum bicolor Sb01g030770 N 0.000
Sb01g048710 Sorghum bicolor Sb01g048710 N 0.000
Sb06g021350 Sorghum bicolor Sb06g021350 I 0.000
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I 0.000
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I 0.000
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I 0.000
Si035841m.g Setaria italica Si035841m.g N 0.000
Si039566m.g Setaria italica Si039566m.g N 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N 0.000
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I 0.000
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I 0.000
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I 0.000
TRIUR3_15472 Triticum urartu TRIUR3_15472 N 0.000
TRIUR3_20880 Triticum urartu TRIUR3_20880 N 0.000
TRIUR3_31242 Triticum urartu TRIUR3_31242 I 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000