Q9FR42_TOBAC (Nicotiana tabacum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Q9FR42_TOBAC T283699_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9FR42_TOBAC
M11076_2.00		 Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.875 0.925
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.875 0.925
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.875 0.925
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.815 0.828
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.815 0.828
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.806 0.806
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.806 0.806
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.806 0.806
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.754 0.774
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.754 0.774
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.737 0.785
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.737 0.785
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.737 0.785
AtMYB81
M07049_2.00 		Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB		 Dap-seq
OMalley et al.(2016)
MYB81_col_a 		0.682 0.742
AtMYB81
M07050_2.00 		Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH		 Dap-seq
OMalley et al.(2016)
MYB81_colamp_a 		0.682 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q9FR42_TOBAC Myb 22 69
Q9FR42_TOBAC Myb 75 120

Links

Other Myb/SANT family TFs
Other Nicotiana tabacum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A_05779 Schistosoma haematobium A_05779 N
CPIJ001753 Culex quinquefasciatus CPIJ001753 N
CpipJ_CPIJ001753 Culex pipiens CpipJ_CPIJ001753 N
csin100710 Clonorchis sinensis csin100710 N
D915_03130 Fasciola hepatica D915_03130 N
DICVIV_09496 Dictyocaulus viviparus DICVIV_09496 I
ECANG7_04547 Echinococcus canadensis ECANG7_04547 N
ELF1 Choloepus hoffmanni ENSCHOG00000005821 I
ELF3 Echinops telfairi ENSETEG00000017768 I
ELF3 Choloepus hoffmanni ENSCHOG00000003346 I
ELF3 Procavia capensis ENSPCAG00000012191 I
ELF3 Macaca mulatta ENSMMUG00000001929 I
ELF3 Ornithorhynchus anatinus ENSOANG00000005784 I
ELF5 Procavia capensis ENSPCAG00000005719 I
EmuJ_000995300 Echinococcus multilocularis EmuJ_000995300 I
ENSECAG00000021269 Equus caballus ENSECAG00000021269 I
ENSEEUG00000010347 Erinaceus europaeus ENSEEUG00000010347 I
ENSGMOG00000019471 Gadus morhua ENSGMOG00000019471 I
ENSMEUG00000000444 Macropus eugenii ENSMEUG00000000444 I
ENSMEUG00000003986 Macropus eugenii ENSMEUG00000003986 I
ENSMEUG00000006132 Macropus eugenii ENSMEUG00000006132 I
ENSOANG00000022349 Ornithorhynchus anatinus ENSOANG00000022349 I
ENSPVAG00000010230 Pteropus vampyrus ENSPVAG00000010230 I
ENSTSYG00000002998 Tarsius syrichta ENSTSYG00000002998 I
GABPA Microcebus murinus ENSMICG00000006341 I
GABPA Ochotona princeps ENSOPRG00000009283 I
GPUH_0002284801 Gongylonema pulchrum GPUH_0002284801 I
HDID_0000502901 Hymenolepis diminuta HDID_0000502901 N
HDID_0000892601 Hymenolepis diminuta HDID_0000892601 I
HelroG63872 Helobdella robusta HelroG63872 I
HmN_000071500 Hymenolepis microstoma HmN_000071500 I
HNAJ_0000958801 Hymenolepis nana HNAJ_0000958801 I
MCOS_0000169201 Mesocestoides corti MCOS_0000169201 N
MhA1_Contig140.frz3.gene1 Meloidogyne hapla MhA1_Contig140.frz3.gene1 I
Minc14958 Meloidogyne incognita Minc14958 I
NECAME_08455 Necator americanus NECAME_08455 I
Ocbimv22017738m.g Octopus bimaculoides Ocbimv22017738m.g I
OFLC_0000896901 Onchocerca flexuosa OFLC_0000896901 I
SCUD_0000725801 Schistosoma curassoni SCUD_0000725801 N
Sjc_0037140 Schistosoma japonicum Sjc_0037140 N
Smp_204720 Schistosoma mansoni Smp_204720 N
SMTD_0001525801 Schistosoma mattheei SMTD_0001525801 N
SPER_0002909201 Spirometra erinaceieuropaei SPER_0002909201 N
SPER_0003658001 Spirometra erinaceieuropaei SPER_0003658001 N
SROB_0000200901 Schistosoma rodhaini SROB_0000200901 N
SSLN_0001232601 Schistocephalus solidus SSLN_0001232601 N
SSLN_0001609301 Schistocephalus solidus SSLN_0001609301 N
T265_08211 Opisthorchis viverrini T265_08211 N
TASK_0000099801 Taenia asiatica TASK_0000099801 I
TELCIR_08433 Teladorsagia circumcincta TELCIR_08433 I
TRE_0002028501 Trichobilharzia regenti TRE_0002028501 N
TRE_0002163001 Trichobilharzia regenti TRE_0002163001 I
TsM_000675600 Taenia solium TsM_000675600 N
TTAC_0000195901 Hydatigera taeniaeformis TTAC_0000195901 I
WUBG_12435 Wuchereria bancrofti WUBG_12435 I