fgenesh1_pg.scaffold_226000065 (Physcomitrella patens)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.scaffold_226000065 T284901_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.685 0.702
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.676 0.702
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.676 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_226000065 Myb 57 108

Links

Other Myb/SANT family TFs
Other Physcomitrella patens TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27757.m000022 Ricinus communis 27757.m000022 I 0.685
29814.m000747 Ricinus communis 29814.m000747 I 0.670
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I 0.685
AT2G40260 Arabidopsis thaliana AT2G40260 D 0.676
Bo4g188940 Brassica oleracea Bo4g188940 I 0.676
Cagra.7053s0009 Capsella grandiflora Cagra.7053s0009 I 0.676
Carubv10023302m.g Capsella rubella Carubv10023302m.g I 0.676
cassava21831.m1 Manihot esculenta cassava21831.m1 I 0.685
cassava33845.m1 Manihot esculenta cassava33845.m1 I 0.685
cassava41268.m1 Manihot esculenta cassava41268.m1 I 0.685
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I 0.671
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I 0.685
estExt_fgenesh2_pg.C_1110034 Physcomitrella patens estExt_fgenesh2_pg.C_1110034 I 0.751
Eucgr.J00182 Eucalyptus grandis Eucgr.J00182 I 0.676
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I 0.685
fgenesh1_pg.scaffold_2000161 Physcomitrella patens fgenesh1_pg.scaffold_2000161 I 0.804
fgenesh1_pg.scaffold_32000038 Physcomitrella patens fgenesh1_pg.scaffold_32000038 I 0.681
fgenesh1_pm.C_scaffold_4001775 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001775 I 0.676
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I 0.685
GRMZM2G333083 Zea mays GRMZM2G333083 I 0.663
GSMUA_Achr7G22410_001 Musa acuminata GSMUA_Achr7G22410_001 I 0.670
Lus10040945.g Linum usitatissimum Lus10040945.g I 0.685
MDP0000617021 Malus domestica MDP0000617021 I 0.685
OB12G10410 Oryza brachyantha OB12G10410 I 0.685
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I 0.671
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I 0.685
PK26523.1 Cannabis sativa PK26523.1 D 0.685
Pm018961 Prunus mume Pm018961 I 0.685
POPTR_0001s28690 Populus trichocarpa POPTR_0001s28690 I 0.670
POPTR_0008s07170 Populus trichocarpa POPTR_0008s07170 I 0.674
POPTR_0009s07890 Populus trichocarpa POPTR_0009s07890 I 0.670
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I 0.685
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I 0.685
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I 0.685
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I 0.670
SapurV1A.0061s0540 Salix purpurea SapurV1A.0061s0540 I 0.674
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I 0.685
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I 0.685
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I 0.666
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I 0.666
TCM_042189 Theobroma cacao TCM_042189 I 0.685
TCM_042463 Theobroma cacao TCM_042463 I 0.685
Thhalv10016733m.g Eutrema salsugineum Thhalv10016733m.g I 0.676
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I 0.675