Bostr.10064s0009 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.10064s0009 T285671_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.875 0.978
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.875 0.978
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.875 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.837 0.913
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.829 0.891
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.829 0.891
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.829 0.891
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.829 0.891
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.829 0.891
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.827 0.891
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.827 0.891
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.827 0.891
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.808 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.747 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.711 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.711 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.711 0.674
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.691 0.674
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.681 0.652
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.681 0.652
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.668 0.609
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.668 0.609
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.668 0.609
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.668 0.609
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.668 0.609
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.10064s0009.1.p Myb 60 105

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

430 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
13440_YKL062W Saccharomyces mikatae 13440_YKL062W I 0.000
13715_YKL062W Saccharomyces paradoxus 13715_YKL062W I 0.000
14538_YKL062W Saccharomyces bayanus 14538_YKL062W I 0.000
16548_YMR037C Saccharomyces mikatae 16548_YMR037C I 0.000
17169_YMR037C Saccharomyces paradoxus 17169_YMR037C I 0.000
17588_YMR037C Saccharomyces bayanus 17588_YMR037C I 0.000
AGOS_ABR089C Ashbya gossypii AGOS_ABR089C I 0.000
BN7_2125 Wickerhamomyces ciferrii BN7_2125 I 0.000
CAGL0F05995g Candida glabrata CAGL0F05995g D 0.000
CAGL0M13189g Candida glabrata CAGL0M13189g D 0.000
CTRG_03253 Candida tropicalis CTRG_03253 I 0.000
Ecym_2301 Eremothecium cymbalariae Ecym_2301 I 0.000
G210_5389 Candida maltosa G210_5389 I 0.000
KAFR_0A02320 Kazachstania africana KAFR_0A02320 I 0.000
KAFR_0F02070 Kazachstania africana KAFR_0F02070 I 0.000
KLLA0_F26961g Kluyveromyces lactis KLLA0_F26961g D 0.000
KLTH0D08734g Kluyveromyces thermotolerans KLTH0D08734g I 0.000
KLTH0D08734g Lachancea thermotolerans KLTH0D08734g I 0.000
KNAG_0H00550 Kazachstania naganishii KNAG_0H00550 I 0.000
KNAG_0M02310 Kazachstania naganishii KNAG_0M02310 I 0.000
Kpol_1013p21 Vanderwaltozyma polyspora Kpol_1013p21 I 0.000
Kpol_185p3 Vanderwaltozyma polyspora Kpol_185p3 I 0.000
Kwal_8351 Kluyveromyces waltii Kwal_8351 I 0.000
LALA0_S09e05358g Lachancea lanzarotensis LALA0_S09e05358g I 0.000
MSN2 Saccharomyces cerevisiae YMR037C D 0.000
MSN4 Saccharomyces cerevisiae YKL062W D 0.000
NCAS_0A12910 Naumovozyma castellii NCAS_0A12910 I 0.000
NCAS_0H03080 Naumovozyma castellii NCAS_0H03080 I 0.000
NDAI_0B01340 Naumovozyma dairenensis NDAI_0B01340 I 0.000
NDAI_0C00560 Naumovozyma dairenensis NDAI_0C00560 I 0.000
SAKL0B11330g Lachancea kluyveri SAKL0B11330g I 0.000
Scas_Contig649.28 Saccharomyces castellii Scas_Contig649.28 I 0.000
Scas_Contig649.29 Saccharomyces castellii Scas_Contig649.29 I 0.000
Scas_Contig709.32 Saccharomyces castellii Scas_Contig709.32 I 0.000
SKUD_158203 Saccharomyces kudriavzevii SKUD_158203 I 0.000
SU7_1995 Saccharomyces arboricola SU7_1995 I 0.000
SU7_2517 Saccharomyces arboricola SU7_2517 I 0.000
TBLA_0G01920 Tetrapisispora blattae TBLA_0G01920 I 0.000
TBLA_0H02830 Tetrapisispora blattae TBLA_0H02830 I 0.000
TDEL_0B06910 Torulaspora delbrueckii TDEL_0B06910 I 0.000
TPHA_0C02580 Tetrapisispora phaffii TPHA_0C02580 I 0.000
TPHA_0N01460 Tetrapisispora phaffii TPHA_0N01460 I 0.000
ZBAI_03527 Zygosaccharomyces bailii ZBAI_03527 I 0.000
ZBAI_08525 Zygosaccharomyces bailii ZBAI_08525 I 0.000
ZYRO0F01012g Zygosaccharomyces rouxii ZYRO0F01012g I 0.000