Bostr.5325s0026 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.5325s0026 T285874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.909 1.000
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.909 1.000
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.881 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.836 0.870
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.800 0.783
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.800 0.783
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.800 0.783
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.800 0.783
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.800 0.783
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.767 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.767 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.767 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.766 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.5325s0026.1.p Myb 24 69

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

299 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACUA008027 Anopheles culicifacies ACUA008027 N
AMAM002480 Anopheles maculatus AMAM002480 N
AMIN008664 Anopheles minimus AMIN008664 N
A_03823 Schistosoma haematobium A_03823 N
Brh_R002088 Buceros rhinoceros Brh_R002088 N
CGI_10021531 Crassostrea gigas CGI_10021531 N
csin106540 Clonorchis sinensis csin106540 N
D915_01091 Fasciola hepatica D915_01091 N
ECANG7_04410 Echinococcus canadensis ECANG7_04410 N
EmuJ_001187700 Echinococcus multilocularis EmuJ_001187700 N
ENSCSAVG00000004620 Ciona savignyi ENSCSAVG00000004620 N
ENSEEUG00000014927 Erinaceus europaeus ENSEEUG00000014927 N
ENSGGOG00000012841 Gorilla gorilla ENSGGOG00000012841 N
ENSPMAG00000007461 Petromyzon marinus ENSPMAG00000007461 N
ENSSHAG00000013518 Sarcophilus harrisii ENSSHAG00000013518 N
ENSTGUG00000015201 Taeniopygia guttata ENSTGUG00000015201 N
ENSTSYG00000004240 Tarsius syrichta ENSTSYG00000004240 N
ENSVPAG00000010492 Vicugna pacos ENSVPAG00000010492 N
HDID_0000819001 Hymenolepis diminuta HDID_0000819001 N
HMEL004008 Heliconius melpomene HMEL004008 N
HmN_000065900 Hymenolepis microstoma HmN_000065900 N
HNAJ_0000675501 Hymenolepis nana HNAJ_0000675501 N
L798_15354 Zootermopsis nevadensis L798_15354 N
LDEC005088 Leptinotarsa decemlineata LDEC005088 N
LotgiG182249 Lottia gigantea LotgiG182249 N
nRc.2.0.1.g17886 Romanomermis culicivorax nRc.2.0.1.g17886 N
Ocbimv22035363m.g Octopus bimaculoides Ocbimv22035363m.g N
Sakowv30022101m.g Saccoglossus kowalevskii Sakowv30022101m.g N
scaffold164-EXSNAP2012.18 Pristionchus exspectatus scaffold164-EXSNAP2012.18 N
SCUD_0000101601 Schistosoma curassoni SCUD_0000101601 N
Sjc_0053770 Schistosoma japonicum Sjc_0053770 N
SMAR014171 Strigamia maritima SMAR014171 N
SMARCA1 Pteropus vampyrus ENSPVAG00000003805 N
Smarca5 Rattus norvegicus ENSRNOG00000021584 N
Smp_008830 Schistosoma mansoni Smp_008830 N
SMRZ_0002157401 Schistosoma margrebowiei SMRZ_0002157401 N
SMU15038703 Schmidtea mediterranea SMU15038703 N
SPER_0000373001 Spirometra erinaceieuropaei SPER_0000373001 N
SPER_0002845401 Spirometra erinaceieuropaei SPER_0002845401 N
SPU_016575 Strongylocentrotus purpuratus SPU_016575 N
swi/snf Ciona intestinalis ENSCING00000004110 N
T265_00769 Opisthorchis viverrini T265_00769 N
tetur03g08660 Tetranychus urticae tetur03g08660 N
TsM_000501300 Taenia solium TsM_000501300 N
TTAC_0000153401 Hydatigera taeniaeformis TTAC_0000153401 N
YQE_02907 Dendroctonus ponderosae YQE_02907 N