Cagra.3373s0030 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.3373s0030 T286112_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.897 0.968
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.732 0.742
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.732 0.742
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.712 0.731
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.712 0.731
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.707 0.710
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.707 0.710
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.672 0.742
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.662 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.662 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.662 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3373s0030.1.p Myb 14 61
Cagra.3373s0030.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

543 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011169 Calypte anna Aan_R011169 N
Alligator_sinensis_CCG019894.1 Alligator sinensis Alligator_sinensis_CCG019894.1 N
Brh_R003489 Buceros rhinoceros Brh_R003489 N
Cmyd_10015130 Chelonia mydas Cmyd_10015130 N
ENSAPLG00000000767 Anas platyrhynchos ENSAPLG00000000767 N
ENSFALG00000002056 Ficedula albicollis ENSFALG00000002056 N
ENSNLEG00000014479 Nomascus leucogenys ENSNLEG00000014479 N
ENSPANG00000000728 Papio anubis ENSPANG00000000728 N
ENSPSIG00000000652 Pelodiscus sinensis ENSPSIG00000000652 N
Gfo_R004188 Geospiza fortis Gfo_R004188 N
Tal_R006725 Tyto alba Tal_R006725 N
ZBTB21 Otolemur garnettii ENSOGAG00000014370 N
ZBTB21 Taeniopygia guttata ENSTGUG00000005526 N
ZBTB21 Oryctolagus cuniculus ENSOCUG00000003265 N
ZBTB21 Meleagris gallopavo ENSMGAG00000016169 N
ZBTB21 Gallus gallus ENSGALG00000016147 N
ZBTB21 Homo sapiens ENSG00000173276 N