Carubv10006734m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10006734m.g T286264_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.884 0.978
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.884 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006734m Myb 222 268
Carubv10006734m Myb 274 319

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.C00590 Eucalyptus grandis Eucgr.C00590 N
fgenesh2_kg.4__494__AT2G25820.1 Arabidopsis lyrata fgenesh2_kg.4__494__AT2G25820.1 N
GSMUA_Achr4G24580_001 Musa acuminata GSMUA_Achr4G24580_001 N
GSMUA_Achr4G26980_001 Musa acuminata GSMUA_Achr4G26980_001 N
GSMUA_Achr5G06570_001 Musa acuminata GSMUA_Achr5G06570_001 N
GSMUA_Achr5G15330_001 Musa acuminata GSMUA_Achr5G15330_001 N
GSMUA_Achr7G06970_001 Musa acuminata GSMUA_Achr7G06970_001 N
GSMUA_AchrUn_randomG27090_001 Musa acuminata GSMUA_AchrUn_randomG27090_001 N
XM_002324763.1 Populus trichocarpa POPTR_0018s00270 N