Carubv10009267m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10009267m.g T286283_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009267m Myb 227 277
Carubv10009274m Myb 226 276

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m004006 Ricinus communis 30138.m004006 N 0.685
AT1G13880 Arabidopsis thaliana AT1G13880 N 0.812
AT2G03470 Arabidopsis thaliana AT2G03470 N 0.719
Bo7g081200 Brassica oleracea Bo7g081200 N 0.808
Bo8g065710 Brassica oleracea Bo8g065710 N 0.889
Bo8g107180 Brassica oleracea Bo8g107180 N 0.811
Bostr.0556s0170 Boechera stricta Bostr.0556s0170 N 0.701
Bostr.13671s0067 Boechera stricta Bostr.13671s0067 N 0.809
Bra016722 Brassica rapa Bra016722 N 0.907
Bra026876 Brassica rapa Bra026876 N 0.895
Bra041096 Brassica rapa Bra041096 N 0.808
Cagra.3501s0113 Capsella grandiflora Cagra.3501s0113 N 0.820
Ciclev10019841m.g Citrus clementina Ciclev10019841m.g N 0.694
Cucsa.198100 Cucumis sativus Cucsa.198100 N 0.684
fgenesh2_kg.1__1502__AT1G13880.1 Arabidopsis lyrata fgenesh2_kg.1__1502__AT1G13880.1 N 0.864
fgenesh2_kg.5__246__AT2G03470.1 Arabidopsis lyrata fgenesh2_kg.5__246__AT2G03470.1 N 0.719
GLYMA04G32690 Glycine max GLYMA04G32690 N 0.680
Gorai.007G039100 Gossypium raimondii Gorai.007G039100 N 0.722
Lus10004658.g Linum usitatissimum Lus10004658.g N 0.780
Lus10036888.g Linum usitatissimum Lus10036888.g N 0.675
Lus10037097.g Linum usitatissimum Lus10037097.g N 0.714
MDP0000658202 Malus domestica MDP0000658202 N 0.672
Pavir.Ia03027 Panicum virgatum Pavir.Ia03027 N 0.689
Pm015999 Prunus mume Pm015999 N 0.661
POPTR_0017s12750 Populus trichocarpa POPTR_0017s12750 N 0.689
SapurV1A.0176s0160 Salix purpurea SapurV1A.0176s0160 N 0.690
SapurV1A.0302s0230 Salix purpurea SapurV1A.0302s0230 N 0.667
SapurV1A.0460s0050 Salix purpurea SapurV1A.0460s0050 N 0.697
Thhalv10005386m.g Eutrema salsugineum Thhalv10005386m.g N 0.808
VIT_17s0000g06810 Vitis vinifera VIT_17s0000g06810 N 0.752