Carubv10022831m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10022831m.g T286416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.909 1.000
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.909 1.000
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.863 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.836 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.744 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.744 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.744 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.744 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.744 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.738 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.738 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.738 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.730 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022831m Myb 24 69

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_074830 Acremonium chrysogenum ACRE_074830 I 0.000
ANIA_00568 Aspergillus nidulans CADANIAG00002110 D 0.000
ARB_00240 Arthroderma benhamiae ARB_00240 I 0.000
CFIO01_12770 Colletotrichum fioriniae CFIO01_12770 I 0.000
CGGC5_7827 Colletotrichum gloeosporioides CGGC5_7827 I 0.000
Cob_12114 Colletotrichum orbiculare Cob_12114 I 0.000
CSUB01_00927 Colletotrichum sublineola CSUB01_00927 I 0.000
CTHT_0023490 Chaetomium thermophilum CTHT_0023490 I 0.000
estExt_Genewise1.C_50767 Neurospora discreta estExt_Genewise1.C_50767 I 0.000
estExt_Genewise1Plus.C_11442 Cryphonectria parasitica estExt_Genewise1Plus.C_11442 N 0.000
e_gw1.10.659.1 Nectria haematococca e_gw1.10.659.1 I 0.000
e_gw1.22.12.1 Nectria haematococca e_gw1.22.12.1 N 0.000
FFUJ_08721 Fusarium fujikuroi FFUJ_08721 I 0.000
FFUJ_11305 Fusarium fujikuroi FFUJ_11305 N 0.000
FGRRES_16506_M Fusarium graminearum FGRRES_16506_M I 0.000
FOXG_17625 Fusarium oxysporum FOXG_17625 N 0.000
FPSE_06178 Fusarium pseudograminearum FPSE_06178 I 0.000
GGTG_01798 Gaeumannomyces graminis GGTG_01798 I 0.000
GLRG_00053 Colletotrichum graminicola GLRG_00053 I 0.000
H101_00939 Trichophyton interdigitale H101_00939 I 0.000
H102_02125 Trichophyton rubrum H102_02125 I 0.000
H105_02141 Trichophyton soudanense H105_02141 I 0.000
MAPG_08318 Magnaporthe poae MAPG_08318 I 0.000
MCYG_05706 Arthroderma otae MCYG_05706 I 0.000
MCYG_05706 Microsporum canis MCYG_05706 I 0.000
MGG_08917 Magnaporthe oryzae MGG_08917 I 0.000
MGYG_02800 Microsporum gypseum MGYG_02800 I 0.000
MYCTH_2304982 Myceliophthora thermophila MYCTH_2304982 I 0.000
NechaG45635 Fusarium solani NechaG45635 N 0.000
NechaG46703 Fusarium solani NechaG46703 I 0.000
OCS_03672 Ophiocordyceps sinensis OCS_03672 N 0.000
PFICI_04048 Pestalotiopsis fici PFICI_04048 N 0.000
PMAA_052840 Penicillium marneffei PMAA_052840 I 0.000
PMAA_052840 Talaromyces marneffei PMAA_052840 I 0.000
S40285_03840 Stachybotrys chlorohalonata S40285_03840 N 0.000
SAPIO_CDS7742 Scedosporium apiospermum SAPIO_CDS7742 N 0.000
SMAC_06700 Sordaria macrospora SMAC_06700 I 0.000
TRIATDRAFT_51984 Trichoderma atroviride TRIATDRAFT_51984 I 0.000
TRIREDRAFT_66828 Trichoderma reesei TRIREDRAFT_66828 I 0.000
TRV_05232 Trichophyton verrucosum TRV_05232 I 0.000
TSTA_020100 Talaromyces stipitatus TSTA_020100 I 0.000
TSTA_122680 Talaromyces stipitatus TSTA_122680 I 0.000
UCREL1_1307 Eutypa lata UCREL1_1307 I 0.000
VDAG_05903 Verticillium dahliae VDAG_05903 I 0.000
VDBG_06838 Verticillium alfalfae VDBG_06838 I 0.000
VDBG_06838 Verticillium albo atrum VDBG_06838 I 0.000
VHEMI05983 Torrubiella hemipterigena VHEMI05983 I 0.000
X797_003138 Metarhizium robertsii X797_003138 N 0.000