Carubv10026172m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10026172m.g T286444_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.909 0.979
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.901 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.901 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.891 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026172m Myb 452 502

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006139 Calypte anna Aan_R006139 I 0.000
Afo_R010307 Aptenodytes forsteri Afo_R010307 I 0.000
Alligator_sinensis_CCG020800.1 Alligator sinensis Alligator_sinensis_CCG020800.1 I 0.000
BGLB013872 Biomphalaria glabrata BGLB013872 I 0.000
Cmyd_10015861 Chelonia mydas Cmyd_10015861 I 0.000
ENSAMEG00000003939 Ailuropoda melanoleuca ENSAMEG00000003939 I 0.000
ENSAMXG00000024826 Astyanax mexicanus ENSAMXG00000024826 I 0.000
ENSBTAP00000005381-D1 Bos grunniens ENSBTAP00000005381-D1 I 0.000
ENSCPOG00000002240 Cavia porcellus ENSCPOG00000002240 I 0.000
ENSCSAG00000019039 Chlorocebus sabaeus ENSCSAG00000019039 I 0.000
ENSFALG00000000552 Ficedula albicollis ENSFALG00000000552 I 0.000
ENSGALG00000028276 Gallus gallus ENSGALG00000028276 I 0.000
ENSGMOG00000000168 Gadus morhua ENSGMOG00000000168 I 0.000
ENSGMOG00000007437 Gadus morhua ENSGMOG00000007437 I 0.000
ENSLACG00000016624 Latimeria chalumnae ENSLACG00000016624 I 0.000
ENSLOCG00000017518 Lepisosteus oculatus ENSLOCG00000017518 I 0.000
ENSMPUG00000020084 Mustela putorius furo ENSMPUG00000020084 I 0.000
ENSNLEG00000000900 Nomascus leucogenys ENSNLEG00000000900 I 0.000
ENSOARG00000011334 Ovis aries ENSOARG00000011334 I 0.000
ENSONIG00000020663 Oreochromis niloticus ENSONIG00000020663 I 0.000
ENSONIG00000020931 Oreochromis niloticus ENSONIG00000020931 I 0.000
ENSPANG00000021818 Papio anubis ENSPANG00000021818 I 0.000
ENSPFOG00000019942 Poecilia formosa ENSPFOG00000019942 I 0.000
ENSPFOG00000020401 Poecilia formosa ENSPFOG00000020401 I 0.000
ENSPPYG00000008486 Pongo abelii ENSPPYG00000008486 I 0.000
ENSPSIG00000001535 Pelodiscus sinensis ENSPSIG00000001535 I 0.000
ENSSTOG00000020820 Ictidomys tridecemlineatus ENSSTOG00000020820 I 0.000
ENSXMAG00000019741 Xiphophorus maculatus ENSXMAG00000019741 I 0.000
ENSXMAG00000019847 Xiphophorus maculatus ENSXMAG00000019847 I 0.000
Gfo_R016263 Geospiza fortis Gfo_R016263 I 0.000
Myotis_brandtii_Neurod2_10030393 Myotis brandtii Myotis_brandtii_Neurod2_10030393 I 0.000
NEUROD2 Takifugu rubripes ENSTRUG00000016237 I 0.000
NEUROD2 Taeniopygia guttata ENSTGUG00000016747 I 0.000
neurod2 Tetraodon nigroviridis ENSTNIG00000001440 I 0.000
NEUROD2 Tetraodon nigroviridis ENSTNIG00000011718 I 0.000
neurod2 Takifugu rubripes ENSTRUG00000000599 I 0.000
NEUROD2 Canis familiaris ENSCAFG00000016407 I 0.000
NEUROD2 Tursiops truncatus ENSTTRG00000007210 I 0.000
NEUROD2 Anolis carolinensis ENSACAG00000017561 I 0.000
neurod2 Xenopus tropicalis XB-GENE-1008512 I 0.000
NEUROD2 Callithrix jacchus ENSCJAG00000008704 I 0.000
NEUROD2 Bos taurus ENSBTAG00000004119 I 0.000
NEUROD2 Gorilla gorilla ENSGGOG00000000493 I 0.000
neurod2 Danio rerio ENSDARG00000016854 I 0.000
NEUROD2 Dasypus novemcinctus ENSDNOG00000013872 I 0.000
NEUROD2 Equus caballus ENSECAG00000020811 I 0.000
NEUROD2 Felis catus ENSFCAG00000027653 I 0.000
NEUROD2 Homo sapiens ENSG00000171532 D 0.000
neurod2 Gasterosteus aculeatus ENSGACG00000006028 I 0.000
NEUROD2 Gasterosteus aculeatus ENSGACG00000008918 I 0.000
NEUROD2 Pteropus vampyrus ENSPVAG00000008509 I 0.000
NEUROD2 Loxodonta africana ENSLAFG00000029558 I 0.000
NEUROD2 Macaca mulatta ENSMMUG00000001404 I 0.000
Neurod2 Mus musculus ENSMUSG00000038255 D 0.000
NEUROD2 Ornithorhynchus anatinus ENSOANG00000003622 I 0.000
NEUROD2 Oryctolagus cuniculus ENSOCUG00000023536 I 0.000
NEUROD2 Otolemur garnettii ENSOGAG00000010543 I 0.000
NEUROD2 Ochotona princeps ENSOPRG00000013289 I 0.000
NEUROD2 Oryzias latipes ENSORLG00000003441 I 0.000
neurod2 Oryzias latipes ENSORLG00000008303 I 0.000
NEUROD2 Pan troglodytes ENSPTRG00000009094 I 0.000
Ocbimv22021915m.g Octopus bimaculoides Ocbimv22021915m.g I 0.000
Ogr16176 Ophisaurus gracilis Ogr16176 I 0.000
Pvit_07639 Pogona vitticeps Pvit_07639 I 0.000