evm.TU.supercontig_114.57 (Carica papaya)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 evm.TU.supercontig_114.57 T287041_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 1.000
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 1.000
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 1.000
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 0.978
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.717
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_114.57 Myb 49 94

Links

Other Myb/SANT family TFs
Other Carica papaya TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_002150 Trichomonas vaginalis TVAG_002150 N
TVAG_013210 Trichomonas vaginalis TVAG_013210 N
TVAG_024040 Trichomonas vaginalis TVAG_024040 N
TVAG_098980 Trichomonas vaginalis TVAG_098980 N
TVAG_153670 Trichomonas vaginalis TVAG_153670 N
TVAG_183950 Trichomonas vaginalis TVAG_183950 N
TVAG_236370 Trichomonas vaginalis TVAG_236370 N
TVAG_240230 Trichomonas vaginalis TVAG_240230 N
TVAG_253420 Trichomonas vaginalis TVAG_253420 N
TVAG_301230 Trichomonas vaginalis TVAG_301230 N
TVAG_346500 Trichomonas vaginalis TVAG_346500 N
TVAG_385510 Trichomonas vaginalis TVAG_385510 N
TVAG_492220 Trichomonas vaginalis TVAG_492220 N
TVAG_503770 Trichomonas vaginalis TVAG_503770 N
TVAG_522310 Trichomonas vaginalis TVAG_522310 N
TVAG_528530 Trichomonas vaginalis TVAG_528530 N
TVAG_562960 Trichomonas vaginalis TVAG_562960 N
TVAG_572150 Trichomonas vaginalis TVAG_572150 N
TVAG_576750 Trichomonas vaginalis TVAG_576750 N
TVAG_595670 Trichomonas vaginalis TVAG_595670 N
TVAG_601940 Trichomonas vaginalis TVAG_601940 N
TVAG_604280 Trichomonas vaginalis TVAG_604280 N
TVAG_605680 Trichomonas vaginalis TVAG_605680 N