Gorai.006G254200 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.006G254200 T287608_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.771 0.828
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.701 0.720
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.701 0.720
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.692 0.699
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.682 0.688
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.682 0.688
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.677 0.720
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.666 0.656
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.666 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G254200.1 Myb 21 68
Gorai.006G254200.1 Myb 74 119

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

603 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000739 Ricinus communis 29814.m000739 I
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I
ABI4 Oryza sativa OS05G0351200 I
ABI4 Vitis vinifera VIT_13s0067g01400 I
ABI4 Arabidopsis thaliana AT2G40220 I
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I
BGIOSGA018232 Oryza indica BGIOSGA018232 I
Bo3g034810 Brassica oleracea Bo3g034810 I
Bo4g025410 Brassica oleracea Bo4g025410 I
Bo8g092010 Brassica oleracea Bo8g092010 I
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I
Bra000178 Brassica rapa Bra000178 I
Bra004978 Brassica rapa Bra004978 I
Bra007341 Brassica rapa Bra007341 I
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I
Carubv10025253m.g Capsella rubella Carubv10025253m.g I
cassava20838.m1 Manihot esculenta cassava20838.m1 I
cassava41265.m1 Manihot esculenta cassava41265.m1 I
Ca_12465 Cicer arietinum Ca_12465 I
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I
Cla006708 Citrullus lanatus Cla006708 I
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I
GLYMA02G43240 Glycine max GLYMA02G43240 I
GLYMA14G06290 Glycine max GLYMA14G06290 I
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I
LPERR05G10140 Leersia perrieri LPERR05G10140 I
Lus10009834.g Linum usitatissimum Lus10009834.g I
Lus10040944.g Linum usitatissimum Lus10040944.g I
MDP0000225376 Malus domestica MDP0000225376 I
MDP0000628484 Malus domestica MDP0000628484 I
mgf024416m Mimulus guttatus mgf024416m I
MTR_5g082950 Medicago truncatula MTR_5g082950 I
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I
OMERI05G11540 Oryza meridionalis OMERI05G11540 I
ONIVA05G13490 Oryza nivara ONIVA05G13490 I
OPUNC05G11000 Oryza punctata OPUNC05G11000 I
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I
Pavir.J29572 Panicum virgatum Pavir.J29572 I
Pavir.J33237 Panicum virgatum Pavir.J33237 I
Pavir.J38620 Panicum virgatum Pavir.J38620 I
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I
Pm018953 Prunus mume Pm018953 I
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I
Sb09g016550 Sorghum bicolor Sb09g016550 I
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I
TCM_042471 Theobroma cacao TCM_042471 I
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I