MDP0000234807 (Malus domestica)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 MDP0000234807 T288463_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.857 0.936
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.732 0.830
estExt_fgenesh1_pg.C_Chr_13.00010057
M02366_2.00 		Ostreococcus tauri
NRMCCTANN
NNTAGGKYN		 PBM
Weirauch et al.(2014)
pTH9424 		0.723 0.681
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.718 0.851
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.718 0.851
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.718 0.851
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.718 0.851
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.716 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000234807 Myb 22 74

Links

Other Myb/SANT family TFs
Other Malus domestica TFs

222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009469 Calypte anna Aan_R009469 N
Afo_R010148 Aptenodytes forsteri Afo_R010148 N
ENSCHOG00000013422 Choloepus hoffmanni ENSCHOG00000013422 N
ENSLAFG00000011036 Loxodonta africana ENSLAFG00000011036 N
ENSMEUG00000011068 Macropus eugenii ENSMEUG00000011068 N
ENSSTOG00000025365 Ictidomys tridecemlineatus ENSSTOG00000025365 N
Hivep1 Rattus norvegicus ENSRNOG00000014460 N
hivep1 Takifugu rubripes ENSTRUG00000010871 I
HIVEP2 Tupaia belangeri ENSTBEG00000016088 N
hivep2.L Xenopus laevis XB-GENE-865555 N
hivep2b Takifugu rubripes ENSTRUG00000007039 I
hivep3.L Xenopus laevis XB-GENE-864883 N
hivep3b Danio rerio ENSDARG00000037154 I
LotgiG60668 Lottia gigantea LotgiG60668 N
MESCA003516 Megaselia scalaris MESCA003516 N
Ogr15910 Ophisaurus gracilis Ogr15910 N
YQE_08862 Dendroctonus ponderosae YQE_08862 N