Pavir.Ab01097 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ab01097 T288991_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38300
M07056_2.00 		Arabidopsis thaliana
WAHATTCYHTH
DADRGAATDTW		 Dap-seq
OMalley et al.(2016)
AT2G38300_col_a 		0.832 0.915
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.824 0.915
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.803 0.851
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.803 0.851
PHL1
M02310_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7122 		0.711 0.702
PHL1
M07132_2.00 		Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK		 Dap-seq
OMalley et al.(2016)
At5g29000_col_a 		0.711 0.702
PHR1
M02302_2.00 		Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN		 PBM
Weirauch et al.(2014)
pTH7249 		0.681 0.702
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.673 0.787
PHL6
M02295_2.00 		Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN		 PBM
Weirauch et al.(2014)
pTH7071 		0.662 0.660
PHL6
M07083_2.00 		Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN		 Dap-seq
OMalley et al.(2016)
At3g13040_col_b 		0.662 0.660
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01097.1.p Myb 118 169

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

438 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH154 Oryza sativa OS04G0641700 N 0.000
F775_12062 Aegilops tauschii F775_12062 N 0.000
F775_12405 Aegilops tauschii F775_12405 N 0.000
ILI1 Oryza indica BGIOSGA014246 N 0.000
OB04G33830 Oryza brachyantha OB04G33830 N 0.000
OBART04G26980 Oryza barthii OBART04G26980 N 0.000
OGLUM04G26950 Oryza glumaepatula OGLUM04G26950 N 0.000
OMERI04G22430 Oryza meridionalis OMERI04G22430 N 0.000
ONIVA04G25390 Oryza nivara ONIVA04G25390 N 0.000
OPUNC04G24510 Oryza punctata OPUNC04G24510 N 0.000
ORGLA04G0234000 Oryza glaberrima ORGLA04G0234000 N 0.000
ORUFI04G28640 Oryza rufipogon ORUFI04G28640 N 0.000
Traes_2AL_7FEF10153 Triticum aestivum Traes_2AL_7FEF10153 N 0.000
Traes_2BL_59B9199D9 Triticum aestivum Traes_2BL_59B9199D9 N 0.000
Traes_2BL_E2B676D40 Triticum aestivum Traes_2BL_E2B676D40 N 0.000
Traes_2DL_5C8D8DACA Triticum aestivum Traes_2DL_5C8D8DACA N 0.000
Traes_2DL_C417E5A19 Triticum aestivum Traes_2DL_C417E5A19 N 0.000