Pavir.Bb02786 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Bb02786 T289044_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.755 0.860
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.689 0.753
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.689 0.753
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.689 0.753
MYB61
M07002_2.00 		Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND		 Dap-seq
OMalley et al.(2016)
MYB61_col_a 		0.661 0.731
MYB61
M07003_2.00 		Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN		 Dap-seq
OMalley et al.(2016)
MYB61_colamp_a 		0.661 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb02786.1.p Myb 13 60
Pavir.Bb02786.1.p Myb 66 111

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

503 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30025247m.g Saccoglossus kowalevskii Sakowv30025247m.g N
Sakowv30025248m.g Saccoglossus kowalevskii Sakowv30025248m.g N
Sakowv30025249m.g Saccoglossus kowalevskii Sakowv30025249m.g N
Sakowv30025250m.g Saccoglossus kowalevskii Sakowv30025250m.g N
Sakowv30025251m.g Saccoglossus kowalevskii Sakowv30025251m.g N
Sakowv30030677m.g Saccoglossus kowalevskii Sakowv30030677m.g N
Sakowv30030678m.g Saccoglossus kowalevskii Sakowv30030678m.g N
Sakowv30030683m.g Saccoglossus kowalevskii Sakowv30030683m.g N
Sakowv30030684m.g Saccoglossus kowalevskii Sakowv30030684m.g N
Sakowv30030688m.g Saccoglossus kowalevskii Sakowv30030688m.g N
Sakowv30030692m.g Saccoglossus kowalevskii Sakowv30030692m.g N
Sakowv30030694m.g Saccoglossus kowalevskii Sakowv30030694m.g N
Sakowv30030697m.g Saccoglossus kowalevskii Sakowv30030697m.g N
Sakowv30030700m.g Saccoglossus kowalevskii Sakowv30030700m.g N
Sakowv30030701m.g Saccoglossus kowalevskii Sakowv30030701m.g N
Sakowv30030703m.g Saccoglossus kowalevskii Sakowv30030703m.g N
Sakowv30030705m.g Saccoglossus kowalevskii Sakowv30030705m.g N
Sakowv30037158m.g Saccoglossus kowalevskii Sakowv30037158m.g N
Sakowv30037159m.g Saccoglossus kowalevskii Sakowv30037159m.g N
Sakowv30037160m.g Saccoglossus kowalevskii Sakowv30037160m.g N
Sakowv30037162m.g Saccoglossus kowalevskii Sakowv30037162m.g N
Sakowv30037163m.g Saccoglossus kowalevskii Sakowv30037163m.g N
Sakowv30037164m.g Saccoglossus kowalevskii Sakowv30037164m.g N
Sakowv30037166m.g Saccoglossus kowalevskii Sakowv30037166m.g N
Sakowv30037168m.g Saccoglossus kowalevskii Sakowv30037168m.g N
Sakowv30037169m.g Saccoglossus kowalevskii Sakowv30037169m.g N
Sakowv30037170m.g Saccoglossus kowalevskii Sakowv30037170m.g N