CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Bb03405
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Bb03405
T289045_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.680
0.758
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.680
0.758
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.680
0.758
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.679
0.780
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Bb03405.1.p
Myb
30
75
VSWSAEEDNVLRAQIAQHGTDNWTIIAAQFKDKTARQCRRRWYNYL
Pavir.Bb03405.1.p
Myb
81
125
KGGWSREEDMLLCEAQKLLGNRWTEIAKVVSGRTDNAVKNRFSTL
Pavir.Bb03405.2.p
Myb
30
75
VSWSAEEDNVLRAQIAQHGTDNWTIIAAQFKDKTARQCRRRWYNYL
Pavir.Bb03405.2.p
Myb
81
125
KGGWSREEDMLLCEAQKLLGNRWTEIAKVVSGRTDNAVKNRFSTL
Pavir.Bb03405.3.p
Myb
30
75
VSWSAEEDNVLRAQIAQHGTDNWTIIAAQFKDKTARQCRRRWYNYL
Pavir.Bb03405.3.p
Myb
81
125
KGGWSREEDMLLCEAQKLLGNRWTEIAKVVSGRTDNAVKNRFSTL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
H101_03828
Trichophyton interdigitale
H101_03828
N
H102_07396
Trichophyton rubrum
H102_07396
N
H105_07426
Trichophyton soudanense
H105_07426
N
MCYG_00476
Microsporum canis
MCYG_00476
N
MCYG_00476
Arthroderma otae
MCYG_00476
N
MGYG_01483
Microsporum gypseum
MGYG_01483
N
TEQG_03698
Trichophyton equinum
TEQG_03698
N
TESG_04244
Trichophyton tonsurans
TESG_04244
N