Pavir.Ca00769 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ca00769 T289057_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.781 0.839
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.781 0.839
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.775 0.849
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.744 0.796
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.744 0.796
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.698 0.828
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.679 0.753
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.679 0.753
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.679 0.753
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.678 0.806
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.668 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00769.1.p Myb 37 84
Pavir.Ca00769.1.p Myb 90 135

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

661 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL009092 Aedes aegypti AAEL009092 N
AAL89720 Xenopus laevis AAL89720 N
AALB003420 Anopheles albimanus AALB003420 N
AARA002212 Anopheles arabiensis AARA002212 N
AATE002410 Anopheles atroparvus AATE002410 N
ACHR009221 Anopheles christyi ACHR009221 N
ACYPI008958 Acyrthosiphon pisum ACYPI008958 N
ADAC010420 Anopheles darlingi ADAC010420 N
AEPI009380 Anopheles epiroticus AEPI009380 N
Afo_R008528 Aptenodytes forsteri Afo_R008528 N
AGAP001761 Anopheles gambiae AGAP001761 N
Alligator_sinensis_CCG000180.1 Alligator sinensis Alligator_sinensis_CCG000180.1 N
Alligator_sinensis_CCG004678.1 Alligator sinensis Alligator_sinensis_CCG004678.1 N
AMEC017514 Anopheles melas AMEC017514 N
AMEM008456 Anopheles merus AMEM008456 N
AQUA000629 Anopheles quadriannulatus AQUA000629 N
cers3.L Xenopus laevis XB-GENE-6251639 N
cers3b Danio rerio ENSDARG00000036337 N
CERS5 Oryzias latipes ENSORLG00000010219 N
CERS5 Tetraodon nigroviridis ENSTNIG00000017897 N
cers5.S Xenopus laevis XB-GENE-866438 N
Cflo_01607--XP_001123059.1_APIME Camponotus floridanus Cflo_01607--XP_001123059.1_APIME N
CLEC001936 Cimex lectularius CLEC001936 N
Cmyd_10017930 Chelonia mydas Cmyd_10017930 N
CPIJ012963 Culex quinquefasciatus CPIJ012963 N
CpipJ_CPIJ012963 Culex pipiens CpipJ_CPIJ012963 N
DAPPUDRAFT_220106 Daphnia pulex DAPPUDRAFT_220106 N
ENSAMXG00000012483 Astyanax mexicanus ENSAMXG00000012483 N
ENSGACG00000002760 Gasterosteus aculeatus ENSGACG00000002760 N
ENSGMOG00000018099 Gadus morhua ENSGMOG00000018099 N
ENSLOCG00000004390 Lepisosteus oculatus ENSLOCG00000004390 N
ENSMGAG00000017003 Meleagris gallopavo ENSMGAG00000017003 N
ENSMICG00000014767 Microcebus murinus ENSMICG00000014767 N
ENSOARG00000017904 Ovis aries ENSOARG00000017904 N
ENSONIG00000017329 Oreochromis niloticus ENSONIG00000017329 N
ENSONIG00000019701 Oreochromis niloticus ENSONIG00000019701 N
ENSPFOG00000013551 Poecilia formosa ENSPFOG00000013551 N
ENSPMAG00000008848 Petromyzon marinus ENSPMAG00000008848 N
ENSSHAG00000001540 Sarcophilus harrisii ENSSHAG00000001540 N
ENSSHAG00000001747 Sarcophilus harrisii ENSSHAG00000001747 N
ENSSHAG00000003870 Sarcophilus harrisii ENSSHAG00000003870 N
ENSXMAG00000010322 Xiphophorus maculatus ENSXMAG00000010322 N
estExt_gwp.C_860189 Branchiostoma floridae estExt_gwp.C_860189 N
e_gw.479.83.1 Branchiostoma floridae e_gw.479.83.1 N
HelroG82517 Helobdella robusta HelroG82517 N
HHAL005214-PA Halyomorpha halys HHAL005214-PA N
HMEL006147 Heliconius melpomene HMEL006147 N
Hsal_14209--XP_001123059.1_APIME Harpegnathos saltator Hsal_14209--XP_001123059.1_APIME N
KGM_15429 Danaus plexippus KGM_15429 N
KGM_16996 Danaus plexippus KGM_16996 N
L798_00373 Zootermopsis nevadensis L798_00373 N
LDEC003623 Leptinotarsa decemlineata LDEC003623 N
LotgiG226091 Lottia gigantea LotgiG226091 N
MCINX005366 Melitaea cinxia MCINX005366 N
MCINX005367 Melitaea cinxia MCINX005367 N
Myotis_brandtii_Lass6_10034918 Myotis brandtii Myotis_brandtii_Lass6_10034918 N
Ogr00854 Ophisaurus gracilis Ogr00854 N
RPRC008736 Rhodnius prolixus RPRC008736 N
SINV20227 Solenopsis invicta SINV20227 N
SINV24013 Solenopsis invicta SINV24013 N
YQE_11876 Dendroctonus ponderosae YQE_11876 N