Pavir.Gb01315 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb01315 T289234_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.823 0.830
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.823 0.830
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.830
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.823 0.830
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.823 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01315.1.p Myb 568 618
Pavir.Gb01315.2.p Myb 568 618

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_04845 Capronia epimyces A1O3_04845 I
A1O5_10900 Cladophialophora psammophila A1O5_10900 I
A1O7_09067 Cladophialophora yegresii A1O7_09067 I
A1O9_08529 Exophiala aquamarina A1O9_08529 I
ACRE_046280 Acremonium chrysogenum ACRE_046280 I
AOL_s00004g609 Arthrobotrys oligospora AOL_s00004g609 I
BAUCODRAFT_138682 Baudoinia compniacensis BAUCODRAFT_138682 N
BAUCODRAFT_39053 Baudoinia compniacensis BAUCODRAFT_39053 I
BBA_06883 Beauveria bassiana BBA_06883 I
BDDG_06646 Blastomyces dermatitidis BDDG_06646 I
CADAFLAG00008989 Aspergillus flavus CADAFLAG00008989 I
CADANGAG00013867 Aspergillus niger CADANGAG00013867 I
CFIO01_00183 Colletotrichum fioriniae CFIO01_00183 I
CH063_11489 Colletotrichum higginsianum CH063_11489 I
CHGG_04711 Chaetomium globosum CHGG_04711 I
CIMG_09213 Coccidioides immitis CIMG_09213 I
Cob_02846 Colletotrichum orbiculare Cob_02846 I
CPC735_016280 Coccidioides posadasii CPC735_016280 I
CSUB01_05654 Colletotrichum sublineola CSUB01_05654 I
CTHT_0032940 Chaetomium thermophilum CTHT_0032940 I
DOTSEDRAFT_74135 Dothistroma septosporum DOTSEDRAFT_74135 I
DOTSEDRAFT_75913 Dothistroma septosporum DOTSEDRAFT_75913 N
DRE_01909 Drechslerella stenobrocha DRE_01909 N
EPUS_07480 Endocarpon pusillum EPUS_07480 I
estExt_Genewise1.C_31155 Mycosphaerella fijiensis estExt_Genewise1.C_31155 I
estExt_Genewise1.C_31209 Neurospora discreta estExt_Genewise1.C_31209 I
estExt_Genewise1Plus.C_chr_90305 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_90305 I
EURHEDRAFT_481352 Aspergillus ruber EURHEDRAFT_481352 I
FFUJ_04567 Fusarium fujikuroi FFUJ_04567 I
fgenesh1_pg.C_chr_12000059 Mycosphaerella graminicola fgenesh1_pg.C_chr_12000059 N
FGRRES_16471_M Fusarium graminearum FGRRES_16471_M I
FOXG_06396 Fusarium oxysporum FOXG_06396 I
FPSE_07163 Fusarium pseudograminearum FPSE_07163 I
FVEG_04246 Fusarium verticillioides FVEG_04246 I
G647_08026 Cladophialophora carrionii G647_08026 I
GLRG_07227 Colletotrichum graminicola GLRG_07227 I
GMDG_07670 Pseudogymnoascus destructans GMDG_07670 I
GSTUM_00002283001 Tuber melanosporum GSTUM_00002283001 I
H072_2295 Dactylellina haptotyla H072_2295 I
H101_04520 Trichophyton interdigitale H101_04520 I
HMPREF1541_10049 Cyphellophora europaea HMPREF1541_10049 I
MBM_00857 Marssonina brunnea MBM_00857 I
MCYG_05152 Microsporum canis MCYG_05152 I
MGG_01518 Magnaporthe oryzae MGG_01518 I
MGYG_06191 Microsporum gypseum MGYG_06191 I
MYCFIDRAFT_95405 Pseudocercospora fijiensis MYCFIDRAFT_95405 I
Mycgr3G75413 Zymoseptoria tritici Mycgr3G75413 I
Mycgr3G96927 Zymoseptoria tritici Mycgr3G96927 N
MYCTH_2298994 Myceliophthora thermophila MYCTH_2298994 I
NEUTE1DRAFT_78894 Neurospora tetrasperma NEUTE1DRAFT_78894 I
nirA Aspergillus nidulans CADANIAG00002651 D
nit-4 Neurospora crassa NCU08294 D
OCS_03410 Ophiocordyceps sinensis OCS_03410 I
OIDMADRAFT_145878 Oidiodendron maius OIDMADRAFT_145878 I
PABG_04941 Paracoccidioides brasiliensis PABG_04941 I
PDE_07492 Penicillium oxalicum PDE_07492 I
PMAA_031240 Penicillium marneffei PMAA_031240 I
PMAA_031240 Talaromyces marneffei PMAA_031240 I
PODANS_6_3660 Podospora anserina PODANS_6_3660 I
PV04_09653 Capronia semiimmersa PV04_09653 I
PV05_00256 Exophiala xenobiotica PV05_00256 I
PV06_07400 Exophiala oligosperma PV06_07400 I
PV07_00058 Cladophialophora immunda PV07_00058 I
PV08_01595 Exophiala spinifera PV08_01595 I
PV09_06735 Verruconis gallopava PV09_06735 I
PV11_03250 Exophiala sideris PV11_03250 I
S40285_05835 Stachybotrys chlorohalonata S40285_05835 I
S40288_02558 Stachybotrys chartarum S40288_02558 I
SAPIO_CDS7494 Scedosporium apiospermum SAPIO_CDS7494 I
SEPMUDRAFT_151303 Sphaerulina musiva SEPMUDRAFT_151303 I
SEPMUDRAFT_152192 Sphaerulina musiva SEPMUDRAFT_152192 N
SMAC_00922 Sordaria macrospora SMAC_00922 I
TEQG_04623 Trichophyton equinum TEQG_04623 I
TESG_03837 Trichophyton tonsurans TESG_03837 I
THITE_2115412 Thielavia terrestris THITE_2115412 I
TSTA_066900 Talaromyces stipitatus TSTA_066900 I
UCRPA7_467 Togninia minima UCRPA7_467 I
V499_08062 Pseudogymnoascus pannorum V499_08062 I
VDAG_08005 Verticillium dahliae VDAG_08005 I
VDBG_01257 Verticillium alfalfae VDBG_01257 I
VDBG_01257 Verticillium albo atrum VDBG_01257 I
VHEMI00532 Torrubiella hemipterigena VHEMI00532 I
Z517_01923 Fonsecaea pedrosoi Z517_01923 I
Z518_03222 Rhinocladiella mackenziei Z518_03222 I
Z519_11440 Cladophialophora bantiana Z519_11440 I