Pavir.J14051 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J14051 T289377_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.763 0.787
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.763 0.787
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.763 0.787
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.763 0.787
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.763 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14051.1.p Myb 526 576

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_14351 Ancylostoma ceylanicum ANCCEY_14351 N 0.000
HCOI00053600 Haemonchus contortus HCOI00053600 N 0.000
HCOI00054300 Haemonchus contortus HCOI00054300 N 0.000
HPBE_0001687501 Heligmosomoides bakeri HPBE_0001687501 N 0.000
HPLM_0000958201 Haemonchus placei HPLM_0000958201 N 0.000
NBR_0000527701 Nippostrongylus brasiliensis NBR_0000527701 N 0.000
NECAME_15133 Necator americanus NECAME_15133 N 0.000