CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

PDK_20s1315421g001 *(Phoenix dactylifera)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	PDK_20s1315421g001	T291091_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.841	0.848
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.799	0.848
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.799	0.848
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.799	0.848
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.780	0.848
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.780	0.848
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.777	0.804
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.777	0.804
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.777	0.804
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.777	0.804
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.777	0.804
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.770	0.826
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.725	0.783
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.725	0.783
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.699	0.696
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.699	0.696
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.699	0.696
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.696	0.652
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.696	0.652
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.696	0.652
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.689	0.696
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.689	0.696
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.689	0.696
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.689	0.674
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.689	0.674
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.689	0.674
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
PDK_20s1315421g001	Myb	39	84	REKWTEEEHKKFLEALQLYGRAWRRIEEYIGTKTAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Phoenix dactylifera* TFs

466 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACOC_0000735101	Angiostrongylus costaricensis	ACOC_0000735101	N
ANCCEY_08318	Ancylostoma ceylanicum	ANCCEY_08318	N
ASU_12421	Ascaris suum	ASU_12421	N
Bm4516	Brugia malayi	Bm4516	N
BTMF_0000196601	Brugia timori	BTMF_0000196601	N
BXY_0943600	Bursaphelenchus xylophilus	BXY_0943600	N
CBG12652	Caenorhabditis briggsae	CBG12652	N
CBN08911	Caenorhabditis brenneri	CBN08911	N
CBN31474	Caenorhabditis brenneri	CBN31474	N
CJA17455	Caenorhabditis japonica	CJA17455	N
CRE24738	Caenorhabditis remanei	CRE24738	N
DICVIV_10160	Dictyocaulus viviparus	DICVIV_10160	N
DME_0000611701	Dracunculus medinensis	DME_0000611701	N
GPLIN_001183200	Globodera pallida	GPLIN_001183200	N
HCOI01581600	Haemonchus contortus	HCOI01581600	N
L596_g8102	Steinernema carpocapsae	L596_g8102	N
L889_g21858	Steinernema feltiae	L889_g21858	N
L892_g27212	Steinernema scapterisci	L892_g27212	N
L893_g27569	Steinernema glaseri	L893_g27569	N
L898_g616	Steinernema monticolum	L898_g616	N
let-607	Caenorhabditis elegans	WBGene00002783	N
LOAG_10644	Loa loa	LOAG_10644	N
nAv.1.0.1.g00516	Acanthocheilonema viteae	nAv.1.0.1.g00516	N
nDi.2.2.2.g01644	Dirofilaria immitis	nDi.2.2.2.g01644	N
NECAME_02209	Necator americanus	NECAME_02209	N
PTRK_0000278100	Parastrongyloides trichosuri	PTRK_0000278100	N
PTRK_0001321400	Parastrongyloides trichosuri	PTRK_0001321400	N
RSKR_0000919500	Rhabditophanes kr3021	RSKR_0000919500	N
SPAL_0001235900	Strongyloides papillosus	SPAL_0001235900	N
SPAL_0001311500	Strongyloides papillosus	SPAL_0001311500	N
SSTP_0000280500	Strongyloides stercoralis	SSTP_0000280500	N
SSTP_0000575300	Strongyloides stercoralis	SSTP_0000575300	N
SVE_0150100	Strongyloides venezuelensis	SVE_0150100	N
SVE_0362500	Strongyloides venezuelensis	SVE_0362500	N
WUBG_03758	Wuchereria bancrofti	WUBG_03758	N

PDK_20s1315421g001 (Phoenix dactylifera) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

466 Related TFs

PDK_20s1315421g001 **(Phoenix dactylifera)
Myb/SANT**