CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI1G63600
(
Brachypodium distachyon
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
BRADI1G63600
T292728_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD
HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.913
0.714
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA
TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.913
0.714
NAC025
M02368_2.00
Arabidopsis thaliana
YACGYAAY
RTTRCGTR
PBM
Weirauch et al.(2014)
pTH7656
0.880
0.777
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G63600.1
NAC/NAM
10
136
PPGFRFHPTDEELILHYLRNRAAESPCPVSIIADVDIYKFDPWALPSKANYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPIRSSATSESVGVKKALVFYKGRPPKGVKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brachypodium distachyon
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI4G09160
Brachypodium distachyon
BRADI4G09160
N
0.000
BRADI4G09170
Brachypodium distachyon
BRADI4G09170
N
0.000
F775_17626
Aegilops tauschii
F775_17626
N
0.000
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.000
Traes_4DS_258687ACC
Triticum aestivum
Traes_4DS_258687ACC
N
0.000
TRIUR3_08698
Triticum urartu
TRIUR3_08698
N
0.000