CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s41460
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0001s41460
T295211_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC055
M00976_2.00
Arabidopsis thaliana
RYACGKAAN
NTTMCGTRY
PBM
Lindemose et al.(2014)
ANAC055
0.929
0.886
NAC055
M00885_2.00
Arabidopsis thaliana
TTACGTD
HACGTAA
PBM
Franco-Zorrilla et al.(2014)
ANAC55
0.929
0.886
NAC055
M07207_2.00
Arabidopsis thaliana
DDNYNWNWNNNDYACGKMWYY
RRWKMCGTRHNNNWNWNRNHH
Dap-seq
OMalley et al.(2016)
ANAC055_col
0.929
0.886
NAC019
M00972_2.00
Arabidopsis thaliana
NNYACGBMWN
NWKVCGTRNN
PBM
Lindemose et al.(2014)
ANAC019
0.911
0.877
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s41460.1
NAC/NAM
15
139
PPGFRFHPTDEELLVQYLCRKVAGHHFSMQIIGEIDLYKFDPWLLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITSDGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy