POPTR_0002s06210 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0002s06210 T295218_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.900 0.754
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.900 0.754
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.900 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s06210.1 NAC/NAM 17 143
POPTR_0002s06210.2 NAC/NAM 17 143
POPTR_0002s06210.3 NAC/NAM 17 143
POPTR_0002s06210.4 NAC/NAM 17 143
POPTR_0002s06210.5 NAC/NAM 17 143

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
21800_YPL128C Saccharomyces mikatae 21800_YPL128C I
22419_YPL128C Saccharomyces paradoxus 22419_YPL128C I
25381_YPL128C Saccharomyces bayanus 25381_YPL128C I
KAFR_0H02660 Kazachstania africana KAFR_0H02660 I
NDAI_0E02210 Naumovozyma dairenensis NDAI_0E02210 I
SKUD_201904 Saccharomyces kudriavzevii SKUD_201904 I
SU7_3534 Saccharomyces arboricola SU7_3534 I
TBF1 Saccharomyces cerevisiae YPL128C D
TBLA_0B04080 Tetrapisispora blattae TBLA_0B04080 I
TPHA_0F03170 Tetrapisispora phaffii TPHA_0F03170 I
ZBAI_00516 Zygosaccharomyces bailii ZBAI_00516 I
ZBAI_05815 Zygosaccharomyces bailii ZBAI_05815 I
ZYRO0F06292g Zygosaccharomyces rouxii ZYRO0F06292g I