CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCM_029931 *(Theobroma cacao)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02365 (NAM)	IPR003441	TCM_029931	T295976_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NAC025 M02368_2.00	Arabidopsis thaliana	YACGYAAY	RTTRCGTR	PBM Weirauch et al.(2014) pTH7656	0.947	0.902
NAC018 M07176_2.00	Arabidopsis thaliana	DYACGBMAYYD	HRRTKVCGTRH	Dap-seq OMalley et al.(2016) NAM_colamp_a	0.932	0.857
NAC018 M07177_2.00	Arabidopsis thaliana	WDNCKWNHNNNWYACGBMA	TKVCGTRWNNNDNWMGNHW	Dap-seq OMalley et al.(2016) NAM_col_v3a	0.932	0.857
NAC002 M00970_2.00	Arabidopsis thaliana	NBACGYAWMN	NKWTRCGTVN	PBM Lindemose et al.(2014) ATAF1	0.871	0.705
NAC002 M07159_2.00	Arabidopsis thaliana	KVCGTRWNNNWHWHKNHHWYND	HNRWDDNMDWDWNNNWYACGBM	Dap-seq OMalley et al.(2016) ATAF1_col_a	0.871	0.705
NAC002 M07160_2.00	Arabidopsis thaliana	YACGY	RCGTR	Dap-seq OMalley et al.(2016) ATAF1_colamp_a	0.871	0.705
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EOY28334	NAC/NAM	16	142	PPGFRFHPTDEELVVHYLKRKAASAPLPVTIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIVTSNGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL

Links
Other NAC/NAM family TFs
Other *Theobroma cacao* TFs

413 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action