Pavir.Eb00261 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.Eb00261 T298829_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27085.1
M01293_2.00 		Cannabis sativa
AATTTATT
AATAAATT		 PBM
Lambert et al.(2019)
pTH11262 		0.993 0.930
anac075
M07223_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYT
ARCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
ANAC075_col_a 		0.993 0.921
NAC010
M07167_2.00 		Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN		 Dap-seq
OMalley et al.(2016)
SND3_colamp_a 		0.971 0.719
NAC010
M07168_2.00 		Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND3_col_b 		0.971 0.719
NAC073
M07221_2.00 		Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG		 Dap-seq
OMalley et al.(2016)
SND2_col_a 		0.959 0.728
NAC073
M07222_2.00 		Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG		 Dap-seq
OMalley et al.(2016)
SND2_colamp_a 		0.959 0.728
PK11990.1
M01290_2.00 		Cannabis sativa
DNAHDNHDNN
NNHDNHDTNH		 PBM
Lambert et al.(2019)
pTH11336 		0.928 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00261.1.p NAC/NAM 45 186
Pavir.Eb00261.2.p NAC/NAM 45 186
Pavir.Eb00261.3.p NAC/NAM 45 186
Pavir.Eb00261.4.p NAC/NAM 45 186

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

353 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BAC58028 Xenopus laevis BAC58028 I 0.000
CABZ01081359.1 Danio rerio ENSDARG00000104578 I 0.000
cxxc4 Xenopus tropicalis XB-GENE-479477 I 0.000
CXXC4 Tursiops truncatus ENSTTRG00000011432 I 0.000
CXXC4 Macaca mulatta ENSMMUG00000011660 I 0.000
cxxc4 Takifugu rubripes ENSTRUG00000004403 I 0.000
Cxxc4 Mus musculus ENSMUSG00000044365 I 0.000
CXXC4 Pteropus vampyrus ENSPVAG00000001501 I 0.000
CXXC4 Sus scrofa ENSSSCG00000025621 I 0.000
CXXC4 Homo sapiens ENSG00000168772 I 0.000
Cxxc4 Rattus norvegicus ENSRNOG00000045764 I 0.000
cxxc4 Danio rerio ENSDARG00000077817 I 0.000
CXXC5 Otolemur garnettii ENSOGAG00000024233 I 0.000
CXXC5 Pan troglodytes ENSPTRG00000017304 I 0.000
CXXC5 Felis catus ENSFCAG00000010527 I 0.000
CXXC5 Homo sapiens ENSG00000171604 D 0.000
CXXC5 Procavia capensis ENSPCAG00000001216 I 0.000
CXXC5 Gorilla gorilla ENSGGOG00000014181 I 0.000
CXXC5 Ochotona princeps ENSOPRG00000003163 I 0.000
CXXC5 Macaca mulatta ENSMMUG00000001941 I 0.000
Cxxc5 Mus musculus ENSMUSG00000046668 I 0.000
CXXC5 Loxodonta africana ENSLAFG00000011784 I 0.000
CXXC5 Microcebus murinus ENSMICG00000002899 I 0.000
CXXC5 Erinaceus europaeus ENSEEUG00000008125 I 0.000
CXXC5 Equus caballus ENSECAG00000016958 I 0.000
CXXC5 Dasypus novemcinctus ENSDNOG00000008161 I 0.000
Cxxc5 Rattus norvegicus ENSRNOG00000003734 I 0.000
Cxxc5 Rattus norvegicus ENSRNOG00000032878 I 0.000
CXXC5 Cavia porcellus ENSCPOG00000001156 I 0.000
CXXC5 Sorex araneus ENSSARG00000013369 I 0.000
CXXC5 Canis familiaris ENSCAFG00000005714 I 0.000
CXXC5 Bos taurus ENSBTAG00000003986 I 0.000
CXXC5 Tupaia belangeri ENSTBEG00000006970 I 0.000
CXXC5 Tursiops truncatus ENSTTRG00000003771 I 0.000
CXXC5 Anolis carolinensis ENSACAG00000002186 I 0.000
cxxc5a Danio rerio ENSDARG00000078865 I 0.000
cxxc5b Danio rerio ENSDARG00000075735 I 0.000
ENSAMEG00000011210 Ailuropoda melanoleuca ENSAMEG00000011210 I 0.000
ENSAMEG00000011282 Ailuropoda melanoleuca ENSAMEG00000011282 I 0.000
ENSAMXG00000005579 Astyanax mexicanus ENSAMXG00000005579 I 0.000
ENSAMXG00000016016 Astyanax mexicanus ENSAMXG00000016016 I 0.000
ENSAMXG00000018855 Astyanax mexicanus ENSAMXG00000018855 I 0.000
ENSAPLG00000014751 Anas platyrhynchos ENSAPLG00000014751 I 0.000
ENSBTAG00000001751 Bos taurus ENSBTAG00000001751 I 0.000
ENSBTAP00000005204-D1 Bos grunniens ENSBTAP00000005204-D1 I 0.000
ENSCAFG00000031237 Canis familiaris ENSCAFG00000031237 I 0.000
ENSCJAG00000015701 Callithrix jacchus ENSCJAG00000015701 I 0.000
ENSCPOG00000021934 Cavia porcellus ENSCPOG00000021934 I 0.000
ENSCSAG00000004010 Chlorocebus sabaeus ENSCSAG00000004010 I 0.000
ENSCSAG00000013001 Chlorocebus sabaeus ENSCSAG00000013001 I 0.000
ENSDORG00000003728 Dipodomys ordii ENSDORG00000003728 I 0.000
ENSETEG00000009591 Echinops telfairi ENSETEG00000009591 I 0.000
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I 0.000
ENSGGOG00000028495 Gorilla gorilla ENSGGOG00000028495 I 0.000
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I 0.000
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I 0.000
ENSLAFG00000030012 Loxodonta africana ENSLAFG00000030012 I 0.000
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I 0.000
ENSMLUG00000003691 Myotis lucifugus ENSMLUG00000003691 I 0.000
ENSMODG00000020651 Monodelphis domestica ENSMODG00000020651 I 0.000
ENSMPUG00000009101 Mustela putorius furo ENSMPUG00000009101 I 0.000
ENSMPUG00000009175 Mustela putorius furo ENSMPUG00000009175 I 0.000
ENSNLEG00000009189 Nomascus leucogenys ENSNLEG00000009189 I 0.000
ENSNLEG00000013306 Nomascus leucogenys ENSNLEG00000013306 I 0.000
ENSOANG00000008235 Ornithorhynchus anatinus ENSOANG00000008235 I 0.000
ENSOARG00000010827 Ovis aries ENSOARG00000010827 I 0.000
ENSOCUG00000015536 Oryctolagus cuniculus ENSOCUG00000015536 I 0.000
ENSOGAG00000026362 Otolemur garnettii ENSOGAG00000026362 I 0.000
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I 0.000
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I 0.000
ENSP00000302543 Macaca fascicularis ENSP00000302543 I 0.000
ENSP00000378248 Macaca fascicularis ENSP00000378248 I 0.000
ENSP00000378248-D1 Bos grunniens ENSP00000378248-D1 I 0.000
ENSPANG00000011930 Papio anubis ENSPANG00000011930 I 0.000
ENSPCAG00000002905 Procavia capensis ENSPCAG00000002905 I 0.000
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I 0.000
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I 0.000
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I 0.000
ENSPPYG00000014973 Pongo abelii ENSPPYG00000014973 I 0.000
ENSPPYG00000015845 Pongo abelii ENSPPYG00000015845 I 0.000
ENSPSIG00000010569 Pelodiscus sinensis ENSPSIG00000010569 I 0.000
ENSPTRG00000016332 Pan troglodytes ENSPTRG00000016332 I 0.000
ENSSARG00000013794 Sorex araneus ENSSARG00000013794 I 0.000
ENSSHAG00000002308 Sarcophilus harrisii ENSSHAG00000002308 I 0.000
ENSSSCG00000009159 Sus scrofa ENSSSCG00000009159 I 0.000
ENSSSCG00000014357 Sus scrofa ENSSSCG00000014357 I 0.000
ENSSTOG00000020058 Ictidomys tridecemlineatus ENSSTOG00000020058 I 0.000
ENSSTOG00000025994 Ictidomys tridecemlineatus ENSSTOG00000025994 I 0.000
ENSTGUG00000003779 Taeniopygia guttata ENSTGUG00000003779 I 0.000
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I 0.000
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I 0.000
ENSVPAG00000010751 Vicugna pacos ENSVPAG00000010751 I 0.000
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I 0.000
Myotis_brandtii_Cxxc4_10030627 Myotis brandtii Myotis_brandtii_Cxxc4_10030627 I 0.000
Pvit_06919 Pogona vitticeps Pvit_06919 I 0.000