CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ga02265 *(Panicum virgatum)* NAC/NAM
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02365 (NAM)	IPR003441	Pavir.Ga02265	T298863_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK27085.1 M01293_2.00	Cannabis sativa	AATTTATT	AATAAATT	PBM Lambert et al.(2019) pTH11262	0.935	0.544
anac075 M07223_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYT	ARCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) ANAC075_col_a	0.935	0.544
NAC010 M07167_2.00	Arabidopsis thaliana	NWWNCTTSWNNNWYAMGHHWYH	DRWDDCKTRWNNNWSAAGNWWN	Dap-seq OMalley et al.(2016) SND3_colamp_a	0.913	0.526
NAC010 M07168_2.00	Arabidopsis thaliana	CKTSWNNNWYAMGYW	WRCKTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND3_col_b	0.913	0.526
NAC073 M07221_2.00	Arabidopsis thaliana	CTTSWNNNWYAMGYH	DRCKTRWNNNWSAAG	Dap-seq OMalley et al.(2016) SND2_col_a	0.902	0.509
NAC073 M07222_2.00	Arabidopsis thaliana	CKTSWNNNWYACGYW	WRCGTRWNNNWSAMG	Dap-seq OMalley et al.(2016) SND2_colamp_a	0.902	0.509
For this family, TFs with SR scores > 0.870* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ga02265.1.p	NAC/NAM	84	221	PKGVKFDPSDQELLWHLLVKIGKLGVKPHPFIDEFIPTIDSNEGLCCTHPQKLSVKQDGSVSHFFHRIFKAYTNGTKKRHKINTDELGEVRWNKTGRTKAVVIGGTHLGCKKIMVMYASNVKGGKQEKTNWVMHQYNV

Links
Other NAC/NAM family TFs
Other *Panicum virgatum* TFs