CJA31285 (Caenorhabditis japonica)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CJA31285 T302000_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.850 0.586
usp
M03934_2.00 		Drosophila melanogaster
ARRGGTCAAAGGTCA
TGACCTTTGACCYYT		 SELEX
Nitta et al.(2015)
usp_1 		0.818 0.557
usp
M06426_2.00 		Drosophila melanogaster
HRRGGTCAH
DTGACCYYD		 B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964 		0.818 0.557
usp
M02709_2.00 		Drosophila melanogaster
GGGGTCACSN
NSGTGACCCC		 SELEX
Mathelier et al.(2014)
MA0016.1 		0.818 0.557
usp
M09689_2.00 		Drosophila melanogaster
KRGGTCACG
CGTGACCYM		 Misc
Kulakovskiy et al.(2009)
usp 		0.818 0.557
usp
M11191_2.00 		Drosophila melanogaster
GRGGTCAYS
SRTGACCYC		 Transfac
Matys et al.(2006)
I$CF1_01 		0.818 0.557
usp
M11192_2.00 		Drosophila melanogaster
GGGGTCAYS
SRTGACCCC		 Transfac
Matys et al.(2006)
I$CF1_02 		0.818 0.557
Rxrb
M02402_2.00 		Mus musculus
VRGGTCAH
DTGACCYB		 PBM
Weirauch et al.(2014)
pTH2861 		0.807 0.529
RXRB
M03415_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRB_1 		0.807 0.529
Rxrb
M03435_2.00 		Mus musculus
GRGGTCAAAGGTCA
TGACCTTTGACCYC		 SELEX
Jolma et al.(2013)
Rxrb_1 		0.807 0.529
RXRB
M05681_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_1 		0.807 0.529
RXRB
M05682_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_HT-SELEX_2 		0.807 0.529
RXRB
M09297_2.00 		Homo sapiens
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_HUMAN.H11MO.0.C 		0.807 0.529
Rxrb
M09330_2.00 		Mus musculus
DSAGGTCASD
HSTGACCTSH		 Misc
Kulakovskiy et al.(2013)
RXRB_MOUSE.H11MO.0.C 		0.807 0.529
RXRB
M05683_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_1 		0.807 0.529
RXRB
M05684_2.00 		Homo sapiens
RRGGTCRYGACCYY
RRGGTCRYGACCYY		 SELEX
Yin et al.(2017)
RXRB_eDBD_Methyl-HT-SELEX_2 		0.807 0.529
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.805 0.514
Rxra
M00181_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Badis et al.(2009)
Rxra_1035 		0.803 0.557
RXRA
M03408_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_1 		0.803 0.557
RXRA
M03409_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_2 		0.803 0.557
RXRA
M03410_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRA_3 		0.803 0.557
RXRA
M03411_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRA_4 		0.803 0.557
Rxra
M03421_2.00 		Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
Rxra_1 		0.803 0.557
Rxra
M03422_2.00 		Mus musculus
RGGTCATGACCY
RGGTCATGACCY		 SELEX
Jolma et al.(2013)
Rxra_2 		0.803 0.557
RXRA
M05671_2.00 		Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX 		0.803 0.557
RXRA
M05882_2.00 		Homo sapiens
VRGKTBAAAGGTYRH
DYRACCTTTVAMCYB		 SMiLE-seq
Isakova et al.(2017)
RXRa 		0.803 0.557
RXRA
M07993_2.00 		Homo sapiens
NRRGGTCA
TGACCYYN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha 		0.803 0.557
RXRA
M07994_2.00 		Homo sapiens
DDNNMRRGGTCANDN
NHNTGACCYYKNNHH		 ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha 		0.803 0.557
RXRA
M09294_2.00 		Homo sapiens
VDDDNDNNVRRRGGKCAVDV
BHBTGMCCYYYBNNHNHHHB		 Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A 		0.803 0.557
Rxra
M09306_2.00 		Mus musculus
DDVNNNNNRAGKTCAAGGYCA
TGRCCTTGAMCTYNNNNNBHH		 Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A 		0.803 0.557
RXRA
M11182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RXRA_07 		0.803 0.557
RXRA
M05672_2.00 		Homo sapiens
RRGGTCAAAGGTCAH
DTGACCTTTGACCYY		 SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX 		0.803 0.557
Rxrg
M02400_2.00 		Mus musculus
VRGGTCAN
NTGACCYB		 PBM
Weirauch et al.(2014)
pTH2880 		0.797 0.543
RXRG
M03375_2.00 		Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
RXRG_1 		0.797 0.543
RXRG
M03376_2.00 		Homo sapiens
RRGGTCATGACCYY
RRGGTCATGACCYY		 SELEX
Jolma et al.(2013)
RXRG_2 		0.797 0.543
RXRG
M03377_2.00 		Homo sapiens
GRGGTCAAAGGTCA
TGACCTTTGACCYC		 SELEX
Jolma et al.(2013)
RXRG_3 		0.797 0.543
RXRG
M03378_2.00 		Homo sapiens
NRGGTCATGACCYC
GRGGTCATGACCYN		 SELEX
Jolma et al.(2013)
RXRG_4 		0.797 0.543
RXRG
M02746_2.00 		Homo sapiens
GGTCAAAGGTCA
TGACCTTTGACC		 SELEX
Jolma et al.(2010)
RXRG_dimer 		0.797 0.543
RXRG
M05615_2.00 		Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB		 SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1 		0.797 0.543
RXRG
M05616_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2 		0.797 0.543
RXRG
M05879_2.00 		Homo sapiens
RGGTBAARGGTBRND
HNYVACCYTTVACCY		 SMiLE-seq
Isakova et al.(2017)
RXRg 		0.797 0.543
RXRG
M09280_2.00 		Homo sapiens
NGTCAAAGGTCAH
DTGACCTTTGACN		 Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B 		0.797 0.543
Rxrg
M09305_2.00 		Mus musculus
VDDVDNSVNRAGKTCAAGGYCA
TGRCCTTGAMCTYNBSNHBHHB		 Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B 		0.797 0.543
RXRG
M05617_2.00 		Homo sapiens
DRGGTBAARGGTBRN
NYVACCYTTVACCYH		 SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1 		0.797 0.543
RXRG
M05618_2.00 		Homo sapiens
VRGGTCAYGACCYB
VRGGTCRTGACCYB		 SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2 		0.797 0.543
NR6A1
M05627_2.00 		Homo sapiens
NNSAAGKTCAAGKKYRN
NYRMMCTTGAMCTTSNN		 SELEX
Yin et al.(2017)
NR6A1_eDBD_HT-SELEX 		0.776 0.500
NR6A1
M09284_2.00 		Homo sapiens
AAGKTCAAGKTCA
TGAMCTTGAMCTT		 Misc
Kulakovskiy et al.(2013)
NR6A1_HUMAN.H11MO.0.B 		0.776 0.500
NR6A1
M11148_2.00 		Homo sapiens
NKCAAGKTCAAGKTCANN
NNTGAMCTTGAMCTTGMN		 Transfac
Matys et al.(2006)
V$GCNF_01 		0.776 0.500
NR6A1
M11149_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCNF_Q3 		0.776 0.500
NR6A1
M05628_2.00 		Homo sapiens
NYSAAGKTCAAGKKCRN
NYGMMCTTGAMCTTSRN		 SELEX
Yin et al.(2017)
NR6A1_eDBD_Methyl-HT-SELEX 		0.776 0.500
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.776 0.557
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.776 0.557
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.776 0.557
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.776 0.557
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.776 0.557
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.776 0.557
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.776 0.557
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.776 0.557
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.776 0.557
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.776 0.557
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.776 0.557
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.776 0.557
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.776 0.557
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.768 0.529
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.768 0.529
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.768 0.529
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.768 0.529
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.768 0.529
ERR
M03941_2.00 		Drosophila melanogaster
BSAAGGTCRH
DYGACCTTSV		 SELEX
Nitta et al.(2015)
ERR_1 		0.766 0.571
ERR
M06433_2.00 		Drosophila melanogaster
MAAGGTCA
TGACCTTK		 B1H
Zhu et al.(2011)
ERR_SANGER_5_FBgn0035849 		0.766 0.571
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.762 0.514
sex-1
M02416_2.00 		Caenorhabditis elegans
RAGGTCAH
DTGACCTY		 PBM
Weirauch et al.(2014)
pTH5667 		0.755 0.557
CBG17178
M02392_2.00 		Caenorhabditis briggsae
RAGGTCAH
DTGACCTY		 PBM
Weirauch et al.(2014)
pTH6634 		0.753 0.543
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CJA31285a Nuclear receptor 207 283
CJA31285b Nuclear receptor 209 285

Links

Other Nuclear receptor family TFs
Other Caenorhabditis japonica TFs

766 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL007686 Aedes aegypti AAEL007686 I 0.000
AALB000872 Anopheles albimanus AALB000872 I 0.000
AARA003745 Anopheles arabiensis AARA003745 I 0.000
ACHR009330 Anopheles christyi ACHR009330 I 0.000
ACOM033499 Anopheles coluzzii ACOM033499 I 0.000
ACUA016697 Anopheles culicifacies ACUA016697 I 0.000
ACUA028096 Anopheles culicifacies ACUA028096 I 0.000
ADAC001048 Anopheles darlingi ADAC001048 I 0.000
ADIR009366 Anopheles dirus ADIR009366 I 0.000
AEPI005313 Anopheles epiroticus AEPI005313 I 0.000
AFAF005195 Anopheles farauti AFAF005195 I 0.000
AFUN000130 Anopheles funestus AFUN000130 I 0.000
AGAP010030 Anopheles gambiae AGAP010030 I 0.000
AMEC010077 Anopheles melas AMEC010077 I 0.000
AMIN006699 Anopheles minimus AMIN006699 I 0.000
ANCCAN_07437 Ancylostoma caninum ANCCAN_07437 I 0.000
ANCCEY_02986 Ancylostoma ceylanicum ANCCEY_02986 I 0.000
ASIM_0001112601 Anisakis simplex ASIM_0001112601 I 0.000
ASTEI03946 Anopheles stephensi ASTEI03946 I 0.000
BGIBMGA013554 Bombyx mori BGIBMGA013554 I 0.000
BGLB010876 Biomphalaria glabrata BGLB010876 I 0.000
CapteG148890 Capitella teleta CapteG148890 I 0.000
CapteG184448 Capitella teleta CapteG184448 I 0.000
CBN07656 Caenorhabditis brenneri CBN07656 I 0.000
CGI_10024861 Crassostrea gigas CGI_10024861 I 0.000
CPIJ006287 Culex quinquefasciatus CPIJ006287 I 0.000
CpipJ_CPIJ006287 Culex pipiens CpipJ_CPIJ006287 I 0.000
ENSAMXG00000010826 Astyanax mexicanus ENSAMXG00000010826 I 0.000
ENSCING00000001311 Ciona intestinalis ENSCING00000001311 I 0.000
ENSCSAVG00000004095 Ciona savignyi ENSCSAVG00000004095 I 0.000
ENSMICG00000001681 Microcebus murinus ENSMICG00000001681 I 0.000
ENSONIG00000002907 Oreochromis niloticus ENSONIG00000002907 I 0.000
ENSSTOG00000021648 Ictidomys tridecemlineatus ENSSTOG00000021648 I 0.000
EVEC_0000854501 Enterobius vermicularis EVEC_0000854501 I 0.000
e_gw.358.43.1 Branchiostoma floridae e_gw.358.43.1 I 0.000
fgenesh2_pg.scaffold_171000007 Branchiostoma floridae fgenesh2_pg.scaffold_171000007 I 0.000
genemark-nMf.1.1.scaf04523-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf04523-processed-gene-0.1 N 0.000
HCOI00814500 Haemonchus contortus HCOI00814500 I 0.000
HPLM_0000399501 Haemonchus placei HPLM_0000399501 I 0.000
ISCW019222 Ixodes scapularis ISCW019222 I 0.000
ISCW021323 Ixodes scapularis ISCW021323 I 0.000
L596_g19748 Steinernema carpocapsae L596_g19748 I 0.000
L889_g19010 Steinernema feltiae L889_g19010 I 0.000
L892_g30919 Steinernema scapterisci L892_g30919 I 0.000
L898_g8988 Steinernema monticolum L898_g8988 I 0.000
LDEC009782 Leptinotarsa decemlineata LDEC009782 I 0.000
LLOJ000427 Lutzomyia longipalpis LLOJ000427 I 0.000
LLOJ002445 Lutzomyia longipalpis LLOJ002445 I 0.000
LotgiG78291 Lottia gigantea LotgiG78291 I 0.000
mafk Gasterosteus aculeatus ENSGACG00000014101 I 0.000
Minc00226 Meloidogyne incognita Minc00226 I 0.000
NRL Homo sapiens ENSG00000129535 D 0.000
nrl Takifugu rubripes ENSTRUG00000016024 I 0.000
NRL Tupaia belangeri ENSTBEG00000009042 I 0.000
NRL Sorex araneus ENSSARG00000010505 I 0.000
nrl Oryzias latipes ENSORLG00000002003 I 0.000
NRL Otolemur garnettii ENSOGAG00000025982 I 0.000
NRL Myotis lucifugus ENSMLUG00000009640 I 0.000
NRL Gorilla gorilla ENSGGOG00000015980 I 0.000
nrl Danio rerio ENSDARG00000100466 I 0.000
OESDEN_08775 Oesophagostomum dentatum OESDEN_08775 I 0.000
OESDEN_13828 Oesophagostomum dentatum OESDEN_13828 I 0.000
PTRK_0001324900 Parastrongyloides trichosuri PTRK_0001324900 N 0.000
SMUV_0000634801 Syphacia muris SMUV_0000634801 I 0.000
SSTP_0000029700 Strongyloides stercoralis SSTP_0000029700 I 0.000
SVE_0161000 Strongyloides venezuelensis SVE_0161000 I 0.000
SVUK_0001190001 Strongylus vulgaris SVUK_0001190001 I 0.000
TC014584 Tribolium castaneum TC014584 I 0.000
TCNE_0000802301 Toxocara canis TCNE_0000802301 I 0.000
TELCIR_07015 Teladorsagia circumcincta TELCIR_07015 I 0.000
TELCIR_18693 Teladorsagia circumcincta TELCIR_18693 I 0.000
tj Drosophila melanogaster FBgn0000964 D 0.000
YQE_11392 Dendroctonus ponderosae YQE_11392 I 0.000