ENSCSAVG00000008466 (Ciona savignyi)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSCSAVG00000008466 T302843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.932 0.614
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.929 0.600
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.929 0.600
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.929 0.600
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.929 0.600
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.929 0.600
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.929 0.600
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.929 0.600
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.929 0.600
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.929 0.600
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.858 0.557
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.858 0.557
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.858 0.557
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.858 0.557
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.818 0.571
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000014468 Nuclear receptor 33 102

Links

Other Nuclear receptor family TFs
Other Ciona savignyi TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009572 Calypte anna Aan_R009572 I 0.929
Afo_R013462 Aptenodytes forsteri Afo_R013462 I 0.930
Alligator_sinensis_CCG005392.1 Alligator sinensis Alligator_sinensis_CCG005392.1 I 0.827
Alligator_sinensis_CCG006068.1 Alligator sinensis Alligator_sinensis_CCG006068.1 I 0.863
A_00943 Schistosoma haematobium A_00943 I 0.776
A_01252 Schistosoma haematobium A_01252 I 0.746
A_01819 Schistosoma haematobium A_01819 I 0.745
CapteG222512 Capitella teleta CapteG222512 I 0.816
CBG07680 Caenorhabditis briggsae CBG07680 I 0.793
CBN09702 Caenorhabditis brenneri CBN09702 I 0.792
CGI_10023181 Crassostrea gigas CGI_10023181 I 0.745
CJA31285 Caenorhabditis japonica CJA31285 I 0.802
Cmyd_10001928 Chelonia mydas Cmyd_10001928 I 0.860
Cmyd_10006875 Chelonia mydas Cmyd_10006875 I 0.930
CRE03966 Caenorhabditis remanei CRE03966 I 0.790
CRE15343 Caenorhabditis remanei CRE15343 I 0.790
csin105672 Clonorchis sinensis csin105672 I 0.781
csin111495 Clonorchis sinensis csin111495 I 0.794
D915_05601 Fasciola hepatica D915_05601 I 0.776
D915_09414 Fasciola hepatica D915_09414 I 0.745
DILT_0000144801 Diphyllobothrium latum DILT_0000144801 I 0.772
ECANG7_07132 Echinococcus canadensis ECANG7_07132 I 0.774
ECPE_0001266201 Echinostoma caproni ECPE_0001266201 I 0.776
EmuJ_000317100 Echinococcus multilocularis EmuJ_000317100 I 0.774
ENSACAG00000001535 Anolis carolinensis ENSACAG00000001535 I 0.858
ENSAMEG00000007006 Ailuropoda melanoleuca ENSAMEG00000007006 I 0.836
ENSAMEG00000013706 Ailuropoda melanoleuca ENSAMEG00000013706 I 0.929
ENSAMXG00000008863 Astyanax mexicanus ENSAMXG00000008863 I 0.821
ENSAMXG00000012991 Astyanax mexicanus ENSAMXG00000012991 I 0.932
ENSAMXG00000019854 Astyanax mexicanus ENSAMXG00000019854 I 0.933
ENSCHOG00000008514 Choloepus hoffmanni ENSCHOG00000008514 I 0.929
ENSCPOG00000006025 Cavia porcellus ENSCPOG00000006025 I 0.929
ENSCSAG00000006576 Chlorocebus sabaeus ENSCSAG00000006576 I 0.929
ENSCSAVG00000001918 Ciona savignyi ENSCSAVG00000001918 I 0.837
ENSGALG00000026166 Gallus gallus ENSGALG00000026166 I 0.929
ENSGALG00000028624 Gallus gallus ENSGALG00000028624 D 0.818
ENSGMOG00000012720 Gadus morhua ENSGMOG00000012720 I 0.932
ENSGMOG00000019451 Gadus morhua ENSGMOG00000019451 I 0.933
ENSLACG00000010334 Latimeria chalumnae ENSLACG00000010334 I 0.835
ENSLACG00000019104 Latimeria chalumnae ENSLACG00000019104 I 0.931
ENSLOCG00000005194 Lepisosteus oculatus ENSLOCG00000005194 I 0.937
ENSMEUG00000000113 Macropus eugenii ENSMEUG00000000113 I 0.817
ENSMEUG00000001987 Macropus eugenii ENSMEUG00000001987 I 0.750
ENSMEUG00000014791 Macropus eugenii ENSMEUG00000014791 I 0.929
ENSMMUP00000008847 Macaca fascicularis ENSMMUP00000008847 I 0.929
ENSMODG00000028774 Monodelphis domestica ENSMODG00000028774 I 0.929
ENSMPUG00000000419 Mustela putorius furo ENSMPUG00000000419 I 0.929
ENSNLEG00000005060 Nomascus leucogenys ENSNLEG00000005060 I 0.858
ENSNLEG00000017900 Nomascus leucogenys ENSNLEG00000017900 I 0.929
ENSOARG00000009965 Ovis aries ENSOARG00000009965 I 0.750
ENSOARG00000019372 Ovis aries ENSOARG00000019372 I 0.929
ENSONIG00000009200 Oreochromis niloticus ENSONIG00000009200 I 0.933
ENSONIG00000019378 Oreochromis niloticus ENSONIG00000019378 I 0.937
ENSP00000229022-D1 Bos grunniens ENSP00000229022-D1 I 0.929
ENSP00000336528 Macaca fascicularis ENSP00000336528 I 0.858
ENSP00000336528-D1 Bos grunniens ENSP00000336528-D1 I 0.822
ENSP00000356959-D1 Bos grunniens ENSP00000356959-D1 I 0.745
ENSPANG00000011327 Papio anubis ENSPANG00000011327 I 0.929
ENSPFOG00000001655 Poecilia formosa ENSPFOG00000001655 I 0.933
ENSPFOG00000014233 Poecilia formosa ENSPFOG00000014233 I 0.933
ENSPMAG00000000180 Petromyzon marinus ENSPMAG00000000180 D 0.932
ENSPMAG00000003695 Petromyzon marinus ENSPMAG00000003695 I 0.917
ENSPPYG00000004448 Pongo abelii ENSPPYG00000004448 I 0.929
ENSPSIG00000004437 Pelodiscus sinensis ENSPSIG00000004437 I 0.860
ENSPSIG00000018108 Pelodiscus sinensis ENSPSIG00000018108 I 0.930
ENSSHAG00000004437 Sarcophilus harrisii ENSSHAG00000004437 I 0.768
ENSSHAG00000016687 Sarcophilus harrisii ENSSHAG00000016687 I 0.772
ENSSTOG00000026741 Ictidomys tridecemlineatus ENSSTOG00000026741 I 0.929
ENSTSYG00000003990 Tarsius syrichta ENSTSYG00000003990 I 0.857
ENSTSYG00000010757 Tarsius syrichta ENSTSYG00000010757 I 0.858
ENSXMAG00000004608 Xiphophorus maculatus ENSXMAG00000004608 I 0.933
ENSXMAG00000018707 Xiphophorus maculatus ENSXMAG00000018707 I 0.933
Gfo_R005027 Geospiza fortis Gfo_R005027 I 0.929
LotgiG138244 Lottia gigantea LotgiG138244 I 0.793
MCOS_0000390701 Mesocestoides corti MCOS_0000390701 I 0.806
MCOS_0000836601 Mesocestoides corti MCOS_0000836601 I 0.767
Myotis_brandtii_NR1I2_10031787 Myotis brandtii Myotis_brandtii_NR1I2_10031787 I 0.845
Myotis_brandtii_VDR_10022134 Myotis brandtii Myotis_brandtii_VDR_10022134 I 0.929
NEMVEDRAFT_v1g94673 Nematostella vectensis NEMVEDRAFT_v1g94673 I 0.771
nhr-2 Caenorhabditis elegans WBGene00003601 I 0.751
nhr-91 Caenorhabditis elegans WBGene00003681 I 0.792
NR1I2 Bos taurus ENSBTAG00000019557 I 0.822
NR1I2 Canis familiaris ENSCAFG00000011094 I 0.785
NR1I2 Callithrix jacchus ENSCJAG00000008854 I 0.858
nr1i2 Danio rerio ENSDARG00000029766 I 0.837
NR1I2 Equus caballus ENSECAG00000008728 I 0.858
NR1I2 Echinops telfairi ENSETEG00000018117 I 0.858
NR1I2 Felis catus ENSFCAG00000006092 I 0.836
NR1I2 Homo sapiens ENSG00000144852 D 0.858
NR1I2 Gorilla gorilla ENSGGOG00000007361 I 0.858
NR1I2 Myotis lucifugus ENSMLUG00000002877 I 0.845
NR1I2 Macaca mulatta ENSMMUG00000001976 I 0.858
NR1I2 Otolemur garnettii ENSOGAG00000006017 I 0.858
NR1I2 Pan troglodytes ENSPTRG00000015263 I 0.858
NR1I2 Pteropus vampyrus ENSPVAG00000000884 I 0.791
NR1I2 Sus scrofa ENSSSCG00000011890 I 0.822
nr1i2.L Xenopus laevis XB-GENE-17336519 I 0.889
nr1i2.S Xenopus laevis XB-GENE-865343 I 0.899
NR1I3 Bos taurus ENSBTAG00000009215 I 0.745
NR1I3 Sus scrofa ENSSSCG00000006353 I 0.745
Ogr03312 Ophisaurus gracilis Ogr03312 I 0.807
Pvit_07440 Pogona vitticeps Pvit_07440 I 0.929
Pvit_09404 Pogona vitticeps Pvit_09404 I 0.827
Pvit_09406 Pogona vitticeps Pvit_09406 I 0.827
PXEA_0000248301 Protopolystoma xenopodis PXEA_0000248301 I 0.757
Q9DFH3_CHICK Gallus gallus Q9DFH3_CHICK I 0.818
Sjc_0027230 Schistosoma japonicum Sjc_0027230 I 0.776
Sjc_0050210 Schistosoma japonicum Sjc_0050210 I 0.772
Sjc_0058250 Schistosoma japonicum Sjc_0058250 I 0.749
Smp_134490 Schistosoma mansoni Smp_134490 I 0.746
Smp_139360 Schistosoma mansoni Smp_139360 I 0.745
Smp_174260 Schistosoma mansoni Smp_174260 I 0.772
SMRZ_0001531701 Schistosoma margrebowiei SMRZ_0001531701 I 0.745
SMTD_0000348601 Schistosoma mattheei SMTD_0000348601 I 0.776
SMU15000518 Schmidtea mediterranea SMU15000518 I 0.783
SNAPOd2T00001873001 Oikopleura dioica SNAPOd2T00001873001 I 0.792
SPER_0003022201 Spirometra erinaceieuropaei SPER_0003022201 I 0.772
SPER_0003074301 Spirometra erinaceieuropaei SPER_0003074301 I 0.772
SPU_017491 Strongylocentrotus purpuratus SPU_017491 I 0.784
SROB_0001733901 Schistosoma rodhaini SROB_0001733901 I 0.772
SSLN_0001246401 Schistocephalus solidus SSLN_0001246401 I 0.772
T265_13831 Opisthorchis viverrini T265_13831 I 0.794
T265_15765 Opisthorchis viverrini T265_15765 I 0.781
TASK_0000086901 Taenia asiatica TASK_0000086901 I 0.781
TRE_0001102901 Trichobilharzia regenti TRE_0001102901 I 0.776
TRE_0001126701 Trichobilharzia regenti TRE_0001126701 I 0.749
TRE_0001717101 Trichobilharzia regenti TRE_0001717101 I 0.776
TsM_000072600 Taenia solium TsM_000072600 I 0.781
TTAC_0000874101 Hydatigera taeniaeformis TTAC_0000874101 I 0.768
VDR Anolis carolinensis ENSACAG00000013485 I 0.929
VDR Bos taurus ENSBTAG00000016414 I 0.929
VDR Canis familiaris ENSCAFG00000009103 I 0.929
VDR Callithrix jacchus ENSCJAG00000015018 I 0.929
VDR Dasypus novemcinctus ENSDNOG00000039161 I 0.929
VDR Equus caballus ENSECAG00000015822 I 0.929
VDR Erinaceus europaeus ENSEEUG00000011116 I 0.929
VDR Felis catus ENSFCAG00000024594 I 0.929
VDR Homo sapiens ENSG00000111424 D 0.929
VDR Gorilla gorilla ENSGGOG00000016473 I 0.929
VDR Loxodonta africana ENSLAFG00000006418 I 0.929
VDR Meleagris gallopavo ENSMGAG00000004846 I 0.929
VDR Microcebus murinus ENSMICG00000009017 I 0.929
VDR Myotis lucifugus ENSMLUG00000000912 I 0.929
VDR Macaca mulatta ENSMMUG00000006727 I 0.929
Vdr Mus musculus ENSMUSG00000022479 D 0.929
VDR Oryctolagus cuniculus ENSOCUG00000027507 I 0.929
VDR Otolemur garnettii ENSOGAG00000005480 I 0.929
vdr Oryzias latipes ENSORLG00000016402 I 0.933
VDR Pteropus vampyrus ENSPVAG00000011085 I 0.929
Vdr Rattus norvegicus ENSRNOG00000054420 I 0.929
VDR Sus scrofa ENSSSCG00000020864 I 0.929
VDR Tupaia belangeri ENSTBEG00000005717 I 0.929
VDR Taeniopygia guttata ENSTGUG00000017093 I 0.929
VDR Tursiops truncatus ENSTTRG00000012578 I 0.929
vdr Xenopus tropicalis XB-GENE-486505 I 0.916
vdr-a Ciona intestinalis ENSCING00000020740 I 0.908
vdr.S Xenopus laevis XB-GENE-864847 I 0.915
vdra Gasterosteus aculeatus ENSGACG00000004763 I 0.932
vdra Tetraodon nigroviridis ENSTNIG00000005559 I 0.832
vdra Takifugu rubripes ENSTRUG00000011907 I 0.933
vdralpha Oryzias latipes ENSORLG00000001063 I 0.933
vdrb Danio rerio ENSDARG00000070721 I 0.933
vdrb Gasterosteus aculeatus ENSGACG00000007975 I 0.932
vdrb Tetraodon nigroviridis ENSTNIG00000007031 I 0.933
vdrb Takifugu rubripes ENSTRUG00000011576 I 0.933