ENSLACG00000015675 (Latimeria chalumnae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSLACG00000015675 T303503_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NR2E1
M02394_2.00 		Homo sapiens
NGAGGTCARN
NYTGACCTCN		 PBM
Weirauch et al.(2014)
pTH6281 		0.989 0.986
Nr2e1
M00814_2.00 		Mus musculus
NNNGTYRNNN
NNNYRACNNN		 PBM
Weirauch et al.(2013)
pTH2936 		0.989 0.986
A1YGC6_PANPA
M02421_2.00 		Pan paniscus
NNGTCANNN
NNNTGACNN		 PBM
Weirauch et al.(2014)
pTH5561 		0.989 0.986
NR2E1
M03364_2.00 		Homo sapiens
WDAAGTCAA
TTGACTTHW		 SELEX
Jolma et al.(2013)
NR2E1_1 		0.989 0.986
NR2E1
M03365_2.00 		Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY		 SELEX
Jolma et al.(2013)
NR2E1_2 		0.989 0.986
Nr2e1
M03427_2.00 		Mus musculus
WDAAGTCAW
WTGACTTHW		 SELEX
Jolma et al.(2013)
Nr2e1_1 		0.989 0.986
Nr2e1
M03428_2.00 		Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY		 SELEX
Jolma et al.(2013)
Nr2e1_2 		0.989 0.986
NR2E1
M05585_2.00 		Homo sapiens
NNAAGTCAN
NTGACTTNN		 SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX 		0.989 0.986
NR2E1
M05586_2.00 		Homo sapiens
NDAAGTCAN
NTGACTTHN		 SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX 		0.989 0.986
dsf
M06431_2.00 		Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT		 B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381 		0.937 0.800
tll
M02408_2.00 		Drosophila melanogaster
NRASGTCAANNN
NNNTTGACSTYN		 PBM
Weirauch et al.(2014)
pTH5714 		0.934 0.814
tll
M03932_2.00 		Drosophila melanogaster
NRAGTCAAAAGTCA
TGACTTTTGACTYN		 SELEX
Nitta et al.(2015)
tll_1 		0.934 0.814
tll
M03933_2.00 		Drosophila melanogaster
NRAGTCAADAAGTCA
TGACTTHTTGACTYN		 SELEX
Nitta et al.(2015)
tll_2 		0.934 0.814
tll
M06558_2.00 		Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW		 B1H
Mathelier et al.(2014)
MA0459.1 		0.934 0.814
tll
M06424_2.00 		Drosophila melanogaster
AAAGTYA
TRACTTT		 B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720 		0.934 0.814
tll
M06425_2.00 		Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW		 B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720 		0.934 0.814
tll
M09688_2.00 		Drosophila melanogaster
MAAAGTCAAH
DTTGACTTTK		 Misc
Kulakovskiy et al.(2009)
tll 		0.934 0.814
tll
M11190_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TLL_Q6 		0.934 0.814
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.770 0.586
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.770 0.586
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.770 0.586
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.770 0.586
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.770 0.586
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.770 0.586
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.770 0.586
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.770 0.586
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.770 0.586
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.770 0.586
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.770 0.586
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.770 0.586
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.770 0.586
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.770 0.586
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.770 0.586
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.770 0.586
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.770 0.586
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.770 0.586
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.770 0.586
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.770 0.586
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.770 0.586
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.770 0.586
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.770 0.586
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.770 0.586
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.770 0.586
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.770 0.586
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.770 0.586
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.770 0.586
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.770 0.586
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.770 0.586
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.770 0.586
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.770 0.586
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.754 0.571
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.754 0.571
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.754 0.571
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.754 0.571
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.754 0.571
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.746 0.557
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.746 0.557
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.746 0.557
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.746 0.557
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.746 0.557
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.746 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000017797 Nuclear receptor 7 78

Links

Other Nuclear receptor family TFs
Other Latimeria chalumnae TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
7247_YGL162W Saccharomyces mikatae 7247_YGL162W I
7806_YGL162W Saccharomyces paradoxus 7806_YGL162W I
8334_YGL162W Saccharomyces bayanus 8334_YGL162W I
ARB_01859 Arthroderma benhamiae ARB_01859 I
CAGL0L09383g Candida glabrata CAGL0L09383g I
CaO19.11817 Candida albicans CaO19.11817 I
CaO19.4342 Candida albicans CaO19.4342 I
CD36_52920 Candida dubliniensis CD36_52920 I
CTRG_05555 Candida tropicalis CTRG_05555 I
G210_3265 Candida maltosa G210_3265 I
KAFR_0C03230 Kazachstania africana KAFR_0C03230 I
KLTH0G17050g Lachancea thermotolerans KLTH0G17050g I
KLTH0G17050g Kluyveromyces thermotolerans KLTH0G17050g I
KNAG_0E03440 Kazachstania naganishii KNAG_0E03440 I
Kwal_1524 Kluyveromyces waltii Kwal_1524 I
LALA0_S09e06612g Lachancea lanzarotensis LALA0_S09e06612g I
MCYG_06533 Arthroderma otae MCYG_06533 I
NDAI_0G03660 Naumovozyma dairenensis NDAI_0G03660 I
SKUD_166402 Saccharomyces kudriavzevii SKUD_166402 I
SKUD_204202 Saccharomyces kudriavzevii SKUD_204202 I
SUT1 Saccharomyces cerevisiae YGL162W D
TBLA_0C00140 Tetrapisispora blattae TBLA_0C00140 I
TDEL_0C01380 Torulaspora delbrueckii TDEL_0C01380 I