NR1I3 (Ochotona princeps)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOPRG00000003455 T304229_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr1i3
M09302_2.00 		Mus musculus
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_MOUSE.H11MO.0.C 		0.982 0.843
NR1I3
M03924_2.00 		Homo sapiens
RGKDYRNNNNRGKKYR
YRMMCYNNNNYRHMCY		 SELEX
Nitta et al.(2015)
NR1I3_1 		0.962 0.857
NR1I3
M05619_2.00 		Homo sapiens
WDAGTTCAH
DTGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_HT-SELEX 		0.962 0.857
NR1I3
M09281_2.00 		Homo sapiens
DRGGTCANNNRAGTTYAN
NTRAACTYNNNTGACCYH		 Misc
Kulakovskiy et al.(2013)
NR1I3_HUMAN.H11MO.0.C 		0.962 0.857
NR1I3
M05620_2.00 		Homo sapiens
WDAGTTCRN
NYGAACTHW		 SELEX
Yin et al.(2017)
NR1I3_FL_Methyl-HT-SELEX 		0.962 0.857
VDR
M03363_2.00 		Homo sapiens
GRGTTCAYHGRGTTCA
TGAACYCDRTGAACYC		 SELEX
Jolma et al.(2013)
VDR_1 		0.853 0.600
Vdr
M03429_2.00 		Mus musculus
RRGTTCAYHGRGTTCA
TGAACYCDRTGAACYY		 SELEX
Jolma et al.(2013)
Vdr_1 		0.853 0.600
VDR
M05877_2.00 		Homo sapiens
HRRGTTCA
TGAACYYD		 SMiLE-seq
Isakova et al.(2017)
VDR 		0.853 0.600
VDR
M09269_2.00 		Homo sapiens
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_HUMAN.H11MO.0.A 		0.853 0.600
Vdr
M09315_2.00 		Mus musculus
NRGGKCANNGRGKKCR
YGMMCYCNNTGMCCYN		 Misc
Kulakovskiy et al.(2013)
VDR_MOUSE.H11MO.0.A 		0.853 0.600
VDR
M09606_2.00 		Homo sapiens
NRRGGTCANNRRGKKCANNN
NNNTGMMCYYNNTGACCYYN		 Misc
Heinz et al.(2010)
GM10855-VDR+vitD_GSE22484 		0.853 0.600
VDR
M11116_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q3 		0.853 0.600
VDR
M11117_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6_01 		0.853 0.600
VDR
M11118_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$VDR_Q6 		0.853 0.600
ENSGALG00000028624
M02398_2.00 		Gallus gallus
GRGKTCAH
DTGAMCYC		 PBM
Weirauch et al.(2014)
pTH6492 		0.834 0.629
ENSPMAG00000000180
M02403_2.00 		Petromyzon marinus
RGKWCRN
NYGWMCY		 PBM
Weirauch et al.(2014)
pTH5509 		0.819 0.586
NR1I2
M03925_2.00 		Homo sapiens
RGKKCRNNVRGKKCR
YGMMCYBNNYGMMCY		 SELEX
Nitta et al.(2015)
NR1I2_1 		0.775 0.600
NR1I2
M05625_2.00 		Homo sapiens
VRGTTCRNNSRGKTCRH
DYGAMCYSNNYGAACYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_HT-SELEX 		0.775 0.600
NR1I2
M09283_2.00 		Homo sapiens
DDRRBTYMDNNRAGKTCAN
NTGAMCTYNNHKRAVYYHH		 Misc
Kulakovskiy et al.(2013)
NR1I2_HUMAN.H11MO.0.C 		0.775 0.600
NR1I2
M05626_2.00 		Homo sapiens
VRGKKCRNNVRGKKCRN
NYGMMCYBNNYGMMCYB		 SELEX
Yin et al.(2017)
NR1I2_eDBD_Methyl-HT-SELEX 		0.775 0.600
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000003167 Nuclear receptor 9 78

Links

Other Nuclear receptor family TFs
Other Ochotona princeps TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB001180 Anopheles albimanus AALB001180 N
AARA010780 Anopheles arabiensis AARA010780 I
AATE014886 Anopheles atroparvus AATE014886 I
ACHR006597 Anopheles christyi ACHR006597 N
ACOM039288 Anopheles coluzzii ACOM039288 I
AEPI004836 Anopheles epiroticus AEPI004836 N
AFAF002012 Anopheles farauti AFAF002012 I
AFUN008227 Anopheles funestus AFUN008227 I
AGAP008818 Anopheles gambiae AGAP008818 I
AMAM006507 Anopheles maculatus AMAM006507 N
AMEC005358 Anopheles melas AMEC005358 I
AMEM011238 Anopheles merus AMEM011238 I
AQUA004183 Anopheles quadriannulatus AQUA004183 N
ASIS007673 Anopheles sinensis ASIS007673 I
BGLB012024 Biomphalaria glabrata BGLB012024 N
CapteG166874 Capitella teleta CapteG166874 I
Cflo_00736--XP_001122746.1_APIME Camponotus floridanus Cflo_00736--XP_001122746.1_APIME I
CLEC006156 Cimex lectularius CLEC006156 I
CPIJ009205 Culex quinquefasciatus CPIJ009205 N
CpipJ_CPIJ009205 Culex pipiens CpipJ_CPIJ009205 N
GB53602 Apis mellifera GB53602 I
GF13369 Drosophila ananassae FBgn0090401 I
GH20564 Drosophila grimshawi FBgn0128027 I
Hsal_04457--XP_001122746.1_APIME Harpegnathos saltator Hsal_04457--XP_001122746.1_APIME I
LCUP005878 Lucilia cuprina LCUP005878 I
LDEC012325 Leptinotarsa decemlineata LDEC012325 N
LLOJ000106 Lutzomyia longipalpis LLOJ000106 I
LLOJ000107 Lutzomyia longipalpis LLOJ000107 N
LotgiG99097 Lottia gigantea LotgiG99097 I
MDOA010966 Musca domestica MDOA010966 I
MESCA000012 Megaselia scalaris MESCA000012 I
Ocbimv22007901m.g Octopus bimaculoides Ocbimv22007901m.g I
PHUM404840 Pediculus humanus PHUM404840 I
PPAI001293 Phlebotomus papatasi PPAI001293 I
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I
TC008672 Tribolium castaneum TC008672 I
YQE_05417 Dendroctonus ponderosae YQE_05417 I