RARB (Ochotona princeps)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 ENSOPRG00000012948 T304254_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rarb
M02401_2.00 		Mus musculus
NRRGGTCAHN
NDTGACCYYN		 PBM
Weirauch et al.(2014)
pTH2804 		0.450 1.000
Rara
M00185_2.00 		Mus musculus
NRGGTCAN
NTGACCYN		 PBM
Badis et al.(2009)
Rara_1051 		0.450 1.000
RARA
M03369_2.00 		Homo sapiens
RRAGGTCAWBWRRGGTCA
TGACCYYWVWTGACCTYY		 SELEX
Jolma et al.(2013)
RARA_1 		0.450 1.000
RARA
M03370_2.00 		Homo sapiens
RAGGTCAAAAGGTCAWKB
VMWTGACCTTTTGACCTY		 SELEX
Jolma et al.(2013)
RARA_2 		0.450 1.000
RARA
M03371_2.00 		Homo sapiens
AGGTCAHNYWRAGGTCA
TGACCTYWRNDTGACCT		 SELEX
Jolma et al.(2013)
RARA_3 		0.450 1.000
RARA
M03372_2.00 		Homo sapiens
ARGGTCAAAAGGTCA
TGACCTTTTGACCYT		 SELEX
Jolma et al.(2013)
RARA_4 		0.450 1.000
RARA
M03373_2.00 		Homo sapiens
WRRGGTCAHSHRRGGTCA
TGACCYYDSDTGACCYYW		 SELEX
Jolma et al.(2013)
RARA_5 		0.450 1.000
RARA
M03374_2.00 		Homo sapiens
AGGTCAWNNARAGGTCA
TGACCTYTNNWTGACCT		 SELEX
Jolma et al.(2013)
RARA_6 		0.450 1.000
RARB
M03355_2.00 		Homo sapiens
AAAGGTCAARAGGTCA
TGACCTYTTGACCTTT		 SELEX
Jolma et al.(2013)
RARB_1 		0.450 1.000
Rara
M03432_2.00 		Mus musculus
AAAGGTCAHBVRAGGTCA
TGACCTYBVDTGACCTTT		 SELEX
Jolma et al.(2013)
Rara_1 		0.450 1.000
Rara
M03433_2.00 		Mus musculus
AGGTCAHNHAAAGGTCA
TGACCTTTDNDTGACCT		 SELEX
Jolma et al.(2013)
Rara_2 		0.450 1.000
Rara
M03434_2.00 		Mus musculus
RAGGTCAAAAGGTCA
TGACCTTTTGACCTY		 SELEX
Jolma et al.(2013)
Rara_3 		0.450 1.000
Rarb
M03423_2.00 		Mus musculus
WAAGGTCAAAAGGTCA
TGACCTTTTGACCTTW		 SELEX
Jolma et al.(2013)
Rarb_1 		0.450 1.000
Rarb
M03424_2.00 		Mus musculus
RRAGGTCANBWRAGGTCA
TGACCTYWVNTGACCTYY		 SELEX
Jolma et al.(2013)
Rarb_2 		0.450 1.000
Rarb
M03425_2.00 		Mus musculus
AGGTCAHVBWRAGGTCA
TGACCTYWVBDTGACCT		 SELEX
Jolma et al.(2013)
Rarb_3 		0.450 1.000
RARA
M05607_2.00 		Homo sapiens
NVGGKCANNRGGKCAN
NTGMCCYNNTGMCCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_1 		0.450 1.000
RARA
M05608_2.00 		Homo sapiens
NVGGKCAYGNCCBN
NVGGNCRTGMCCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_2 		0.450 1.000
RARA
M05609_2.00 		Homo sapiens
NRRGGTCANV
BNTGACCYYN		 SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_3 		0.450 1.000
RARB
M05563_2.00 		Homo sapiens
NHAAGGTCAN
NTGACCTTDN		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_1 		0.450 1.000
RARB
M05564_2.00 		Homo sapiens
RRGGTCAARRGGTCAN
NTGACCYYTTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_2 		0.450 1.000
RARB
M05565_2.00 		Homo sapiens
DAGGTCAYGACCYY
RRGGTCRTGACCTH		 SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_3 		0.450 1.000
RARA
M05878_2.00 		Homo sapiens
RAGGTCA
TGACCTY		 SMiLE-seq
Isakova et al.(2017)
RARa 		0.450 1.000
RARA
M09277_2.00 		Homo sapiens
RRRDVDBSNDRAGKTCARGG
CCYTGAMCTYHNSVHBHYYY		 Misc
Kulakovskiy et al.(2013)
RARA_HUMAN.H11MO.0.A 		0.450 1.000
Rara
M09329_2.00 		Mus musculus
RGRTCRDRAGKTCAAGGTCA
TGACCTTGAMCTYHYGAYCY		 Misc
Kulakovskiy et al.(2013)
RARA_MOUSE.H11MO.0.A 		0.450 1.000
RARA
M11137_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR1B1_Q6 		0.450 1.000
RARB
M11094_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NR1B2_Q6 		0.450 1.000
RARA
M05610_2.00 		Homo sapiens
DRGGKCRNDRGGTCRN
NYGACCYHNYGMCCYH		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_1 		0.450 1.000
RARA
M05611_2.00 		Homo sapiens
NVGGTCAYGMCCYN
NRGGKCRTGACCBN		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_2 		0.450 1.000
RARA
M05612_2.00 		Homo sapiens
NRAGGTCANN
NNTGACCTYN		 SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_3 		0.450 1.000
RARB
M05566_2.00 		Homo sapiens
NHRAGGTCAH
DTGACCTYDN		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_1 		0.450 1.000
RARB
M05567_2.00 		Homo sapiens
RRGGTCAHRRGGTCAN
NTGACCYYDTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_2 		0.450 1.000
RARB
M05568_2.00 		Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY		 SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_3 		0.450 1.000
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000011818 Nuclear receptor 79 108

Links

Other Nuclear receptor family TFs
Other Ochotona princeps TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005705 Calypte anna Aan_R005705 I
Afo_R004479 Aptenodytes forsteri Afo_R004479 I
Alligator_sinensis_CCG009677.1 Alligator sinensis Alligator_sinensis_CCG009677.1 I
Brh_R010947 Buceros rhinoceros Brh_R010947 I
Cmyd_10014556 Chelonia mydas Cmyd_10014556 I
ENSAMXG00000020476 Astyanax mexicanus ENSAMXG00000020476 I
ENSCSAG00000012661 Chlorocebus sabaeus ENSCSAG00000012661 I
ENSFALG00000006227 Ficedula albicollis ENSFALG00000006227 I
ENSLOCG00000011015 Lepisosteus oculatus ENSLOCG00000011015 I
ENSMMUP00000014588 Macaca fascicularis ENSMMUP00000014588 I
ENSMPUG00000009582 Mustela putorius furo ENSMPUG00000009582 I
ENSNLEG00000016090 Nomascus leucogenys ENSNLEG00000016090 I
ENSOARG00000000761 Ovis aries ENSOARG00000000761 I
ENSP00000407130-D1 Bos grunniens ENSP00000407130-D1 I
ENSPANG00000013439 Papio anubis ENSPANG00000013439 I
ENSPSIG00000014551 Pelodiscus sinensis ENSPSIG00000014551 I
ENSSHAG00000004595 Sarcophilus harrisii ENSSHAG00000004595 I
ENSTSYG00000005601 Tarsius syrichta ENSTSYG00000005601 I
ENSXMAG00000008410 Xiphophorus maculatus ENSXMAG00000008410 I
Gfo_R012933 Geospiza fortis Gfo_R012933 I
Myotis_brandtii_ZNF410_10012915 Myotis brandtii Myotis_brandtii_ZNF410_10012915 I
Pvit_15628 Pogona vitticeps Pvit_15628 I
Tal_R011336 Tyto alba Tal_R011336 I
Zfp410 Rattus norvegicus ENSRNOG00000010985 I
Zfp410 Mus musculus ENSMUSG00000042472 D
ZNF410 Vicugna pacos ENSVPAG00000000794 I
ZNF410 Anolis carolinensis ENSACAG00000016111 I
ZNF410 Bos taurus ENSBTAG00000020327 I
ZNF410 Canis familiaris ENSCAFG00000016876 I
ZNF410 Callithrix jacchus ENSCJAG00000020308 I
ZNF410 Cavia porcellus ENSCPOG00000009601 I
ZNF410 Equus caballus ENSECAG00000014531 I
ZNF410 Felis catus ENSFCAG00000030643 I
ZNF410 Homo sapiens ENSG00000119725 D
ZNF410 Gallus gallus ENSGALG00000010193 I
ZNF410 Gorilla gorilla ENSGGOG00000000715 I
ZNF410 Loxodonta africana ENSLAFG00000018117 I
ZNF410 Meleagris gallopavo ENSMGAG00000012603 I
ZNF410 Microcebus murinus ENSMICG00000002992 I
ZNF410 Taeniopygia guttata ENSTGUG00000012076 I
ZNF410 Sus scrofa ENSSSCG00000002352 I
ZNF410 Myotis lucifugus ENSMLUG00000008658 I
ZNF410 Pteropus vampyrus ENSPVAG00000000640 I
ZNF410 Pan troglodytes ENSPTRG00000006525 I
ZNF410 Macaca mulatta ENSMMUG00000011144 I
ZNF410 Procavia capensis ENSPCAG00000010015 I
ZNF410 Monodelphis domestica ENSMODG00000006622 I
ZNF410 Oryctolagus cuniculus ENSOCUG00000006787 I