CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NR6A1
(
Procavia capensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSPCAG00000006000
T304387_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR6A1
M05627_2.00
Homo sapiens
NNSAAGKTCAAGKKYRN
NYRMMCTTGAMCTTSNN
SELEX
Yin et al.(2017)
NR6A1_eDBD_HT-SELEX
0.739
1.000
NR6A1
M09284_2.00
Homo sapiens
AAGKTCAAGKTCA
TGAMCTTGAMCTT
Misc
Kulakovskiy et al.(2013)
NR6A1_HUMAN.H11MO.0.B
0.739
1.000
NR6A1
M11148_2.00
Homo sapiens
NKCAAGKTCAAGKTCANN
NNTGAMCTTGAMCTTGMN
Transfac
Matys et al.(2006)
V$GCNF_01
0.739
1.000
NR6A1
M11149_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCNF_Q3
0.739
1.000
NR6A1
M05628_2.00
Homo sapiens
NYSAAGKTCAAGKKCRN
NYGMMCTTGAMCTTSRN
SELEX
Yin et al.(2017)
NR6A1_eDBD_Methyl-HT-SELEX
0.739
1.000
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000005579
Nuclear receptor
24
65
RTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRXXXXXXX
Links
Other
Nuclear receptor
family TFs
Other
Procavia capensis
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy