CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Minc13525
(
Meloidogyne incognita
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Minc13525
T307414_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-3
M00687_2.00
Caenorhabditis elegans
NNHGDHYANN
NNTRDHCDNN
PBM
Narasimhan et al.(2015)
pTH9163
0.985
0.757
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc13525
Nuclear receptor
4
73
TLLNVCGDEASGRHYGASTCFGCKGFFRRTVRANKQYNCRYEEKCQIDKVGRNICRACRFQKCLTVGMEP
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne incognita
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27904.m000217
Ricinus communis
27904.m000217
I
29983.m003147
Ricinus communis
29983.m003147
I
30190.m011321
Ricinus communis
30190.m011321
I
AMTR_s00115p00032780
Amborella trichopoda
AMTR_s00115p00032780
I
Aquca_036_00070
Aquilegia coerulea
Aquca_036_00070
I
ATERF-4
Arabidopsis lyrata
scaffold_301765.1
I
BGIOSGA004611
Oryza indica
BGIOSGA004611
I
BGIOSGA014134
Oryza indica
BGIOSGA014134
I
BGIOSGA017088
Oryza indica
BGIOSGA017088
I
BGIOSGA017796
Oryza indica
BGIOSGA017796
I
Bo1g129710
Brassica oleracea
Bo1g129710
I
Bo2g122260
Brassica oleracea
Bo2g122260
I
Bo3g066710
Brassica oleracea
Bo3g066710
I
Bo3g143350
Brassica oleracea
Bo3g143350
I
Bo5g004090
Brassica oleracea
Bo5g004090
I
Bo5g127380
Brassica oleracea
Bo5g127380
I
Bo7g048170
Brassica oleracea
Bo7g048170
I
Bostr.26675s0388
Boechera stricta
Bostr.26675s0388
I
Bostr.28625s0184
Boechera stricta
Bostr.28625s0184
I
Bostr.3148s0037
Boechera stricta
Bostr.3148s0037
I
Bra001588
Brassica rapa
Bra001588
I
Bra003701
Brassica rapa
Bra003701
I
Bra006325
Brassica rapa
Bra006325
I
Bra010880
Brassica rapa
Bra010880
I
Bra015266
Brassica rapa
Bra015266
I
Bra021594
Brassica rapa
Bra021594
I
Bra027270
Brassica rapa
Bra027270
I
Bra030095
Brassica rapa
Bra030095
I
Bra030957
Brassica rapa
Bra030957
I
Bra036016
Brassica rapa
Bra036016
I
BRADI2G21060
Brachypodium distachyon
BRADI2G21060
I
BRADI2G52370
Brachypodium distachyon
BRADI2G52370
I
Cagra.0381s0006
Capsella grandiflora
Cagra.0381s0006
I
Cagra.0897s0005
Capsella grandiflora
Cagra.0897s0005
I
Cagra.1472s0014
Capsella grandiflora
Cagra.1472s0014
I
Carubv10010374m.g
Capsella rubella
Carubv10010374m.g
I
Carubv10011371m.g
Capsella rubella
Carubv10011371m.g
I
Carubv10014552m.g
Capsella rubella
Carubv10014552m.g
I
Carubv10027246m.g
Capsella rubella
Carubv10027246m.g
I
cassava1589.valid.m1
Manihot esculenta
cassava1589.valid.m1
I
cassava20937.m1
Manihot esculenta
cassava20937.m1
I
cassava37846.valid.m1
Manihot esculenta
cassava37846.valid.m1
I
cassava46560.m1
Manihot esculenta
cassava46560.m1
I
Ca_00327
Cicer arietinum
Ca_00327
I
Ca_11261
Cicer arietinum
Ca_11261
I
Ca_22534
Cicer arietinum
Ca_22534
I
chr6.CM0114.120.nc
Lotus japonicus
chr6.CM0114.120.nc
I
Ciclev10009484m.g
Citrus clementina
Ciclev10009484m.g
I
Ciclev10016276m.g
Citrus clementina
Ciclev10016276m.g
I
Ciclev10016463m.g
Citrus clementina
Ciclev10016463m.g
I
Cla002268
Citrullus lanatus
Cla002268
I
Cla009795
Citrullus lanatus
Cla009795
I
Cla020000
Citrullus lanatus
Cla020000
I
Cucsa.046390
Cucumis sativus
Cucsa.046390
I
Cucsa.126880
Cucumis sativus
Cucsa.126880
I
Cucsa.195660
Cucumis sativus
Cucsa.195660
I
ERF4
Arabidopsis thaliana
AT3G15210
D
ERF4_TOBAC
Nicotiana tabacum
ERF4_TOBAC
D
ERF9
Arabidopsis thaliana
AT5G44210
D
ERF9
Arabidopsis lyrata
fgenesh2_kg.8__388__AT5G44210.1
I
Eucgr.F01164
Eucalyptus grandis
Eucgr.F01164
I
evm.TU.supercontig_131.83
Carica papaya
evm.TU.supercontig_131.83
I
evm.TU.supercontig_27.16
Carica papaya
evm.TU.supercontig_27.16
I
evm.TU.supercontig_83.80
Carica papaya
evm.TU.supercontig_83.80
I
F775_20810
Aegilops tauschii
F775_20810
I
gene29738-v1.0-hybrid
Fragaria vesca
gene29738-v1.0-hybrid
I
GLYMA06G35710
Glycine max
GLYMA06G35710
I
GLYMA06G44430
Glycine max
GLYMA06G44430
I
GLYMA07G23225
Glycine max
GLYMA07G23225
I
GLYMA10G07005
Glycine max
GLYMA10G07005
I
GLYMA12G13315
Glycine max
GLYMA12G13315
I
GLYMA12G26836
Glycine max
GLYMA12G26836
I
GLYMA12G35550
Glycine max
GLYMA12G35550
I
GLYMA13G30990
Glycine max
GLYMA13G30990
I
GLYMA13G34920
Glycine max
GLYMA13G34920
I
GLYMA15G08370
Glycine max
GLYMA15G08370
I
Gorai.002G067600
Gossypium raimondii
Gorai.002G067600
I
Gorai.005G200200
Gossypium raimondii
Gorai.005G200200
I
Gorai.006G088000
Gossypium raimondii
Gorai.006G088000
I
Gorai.009G375700
Gossypium raimondii
Gorai.009G375700
I
Gorai.010G155900
Gossypium raimondii
Gorai.010G155900
I
Gorai.010G256600
Gossypium raimondii
Gorai.010G256600
I
Gorai.011G029800
Gossypium raimondii
Gorai.011G029800
I
GRMZM2G020150
Zea mays
GRMZM2G020150
I
GRMZM2G068967
Zea mays
GRMZM2G068967
I
GRMZM2G132185
Zea mays
GRMZM2G132185
I
GRMZM2G174347
Zea mays
GRMZM2G174347
I
GRMZM2G310368
Zea mays
GRMZM2G310368
I
GRMZM2G438202
Zea mays
GRMZM2G438202
I
GSMUA_Achr4G23620_001
Musa acuminata
GSMUA_Achr4G23620_001
I
GSMUA_Achr4G33270_001
Musa acuminata
GSMUA_Achr4G33270_001
I
GSMUA_Achr6G00250_001
Musa acuminata
GSMUA_Achr6G00250_001
I
GSMUA_Achr7G00350_001
Musa acuminata
GSMUA_Achr7G00350_001
I
GSMUA_Achr7G03640_001
Musa acuminata
GSMUA_Achr7G03640_001
I
GSMUA_Achr8G03550_001
Musa acuminata
GSMUA_Achr8G03550_001
I
GSMUA_Achr9G11480_001
Musa acuminata
GSMUA_Achr9G11480_001
I
LPERR01G29260
Leersia perrieri
LPERR01G29260
I
LPERR04G20430
Leersia perrieri
LPERR04G20430
I
LPERR05G17480
Leersia perrieri
LPERR05G17480
I
Lus10015415.g
Linum usitatissimum
Lus10015415.g
I
Lus10018623.g
Linum usitatissimum
Lus10018623.g
I
Lus10039857.g
Linum usitatissimum
Lus10039857.g
I
MDP0000324718
Malus domestica
MDP0000324718
I
mgf019214m
Mimulus guttatus
mgf019214m
I
MLOC_24530
Hordeum vulgare
MLOC_24530
I
MLOC_73358
Hordeum vulgare
MLOC_73358
I
MTR_2g014340
Medicago truncatula
MTR_2g014340
I
MTR_2g078680
Medicago truncatula
MTR_2g078680
I
MTR_4g078710
Medicago truncatula
MTR_4g078710
I
OB01G42720
Oryza brachyantha
OB01G42720
I
OBART01G33870
Oryza barthii
OBART01G33870
I
OBART04G25320
Oryza barthii
OBART04G25320
I
OBART05G21580
Oryza barthii
OBART05G21580
I
OGLUM01G38110
Oryza glumaepatula
OGLUM01G38110
I
OGLUM04G24780
Oryza glumaepatula
OGLUM04G24780
I
OGLUM04G28860
Oryza glumaepatula
OGLUM04G28860
I
OGLUM05G22790
Oryza glumaepatula
OGLUM05G22790
I
OLONG_021733
Oryza longistaminata
OLONG_021733
I
OMERI01G30710
Oryza meridionalis
OMERI01G30710
I
OMERI04G20480
Oryza meridionalis
OMERI04G20480
I
OMERI04G24480
Oryza meridionalis
OMERI04G24480
I
OMERI05G19490
Oryza meridionalis
OMERI05G19490
I
ONIVA01G38670
Oryza nivara
ONIVA01G38670
I
ONIVA04G24000
Oryza nivara
ONIVA04G24000
I
ONIVA04G27460
Oryza nivara
ONIVA04G27460
I
ONIVA05G22270
Oryza nivara
ONIVA05G22270
I
OPUNC01G32930
Oryza punctata
OPUNC01G32930
I
OPUNC04G22340
Oryza punctata
OPUNC04G22340
I
OPUNC05G19230
Oryza punctata
OPUNC05G19230
I
orange1.1g026240m.g
Citrus sinensis
orange1.1g026240m.g
I
orange1.1g028454m.g
Citrus sinensis
orange1.1g028454m.g
I
ORGLA01G0278100
Oryza glaberrima
ORGLA01G0278100
I
ORGLA04G0219400
Oryza glaberrima
ORGLA04G0219400
I
ORGLA05G0187600
Oryza glaberrima
ORGLA05G0187600
I
ORUFI01G37120
Oryza rufipogon
ORUFI01G37120
I
ORUFI04G26530
Oryza rufipogon
ORUFI04G26530
I
ORUFI04G30650
Oryza rufipogon
ORUFI04G30650
I
ORUFI05G22850
Oryza rufipogon
ORUFI05G22850
I
OS01G0797600
Oryza sativa
OS01G0797600
I
OS04G0610400
Oryza sativa
OS04G0610400
I
OS04G0669200
Oryza sativa
OS04G0669200
I
OS05G0497300
Oryza sativa
OS05G0497300
I
Pavir.Ca01358
Panicum virgatum
Pavir.Ca01358
I
Pavir.Ea03147
Panicum virgatum
Pavir.Ea03147
I
Pavir.Eb03458
Panicum virgatum
Pavir.Eb03458
I
Pavir.Ga00187
Panicum virgatum
Pavir.Ga00187
I
Pavir.Ga00485
Panicum virgatum
Pavir.Ga00485
I
Pavir.Gb00092
Panicum virgatum
Pavir.Gb00092
I
Pavir.Gb00545
Panicum virgatum
Pavir.Gb00545
I
Pavir.J14354
Panicum virgatum
Pavir.J14354
I
PGSC0003DMG400012828
Solanum tuberosum
PGSC0003DMG400012828
I
PGSC0003DMG400013744
Solanum tuberosum
PGSC0003DMG400013744
I
PGSC0003DMG400022823
Solanum tuberosum
PGSC0003DMG400022823
I
PGSC0003DMG400026821
Solanum tuberosum
PGSC0003DMG400026821
I
PK02602.1
Cannabis sativa
PK02602.1
I
PK19363.1
Cannabis sativa
PK19363.1
D
Pm011391
Prunus mume
Pm011391
I
POPTR_0001s40770
Populus trichocarpa
POPTR_0001s40770
I
POPTR_0004s04720
Populus trichocarpa
POPTR_0004s04720
I
POPTR_0007s01110
Populus trichocarpa
POPTR_0007s01110
I
POPTR_0011s05580
Populus trichocarpa
POPTR_0011s05580
I
POPTR_0011s11620
Populus trichocarpa
POPTR_0011s11620
I
POPTR_0017s04540
Populus trichocarpa
POPTR_0017s04540
I
PRUPE_ppa010090mg
Prunus persica
PRUPE_ppa010090mg
I
PRUPE_ppa010982mg
Prunus persica
PRUPE_ppa010982mg
I
Q84LQ6_SOLLC
Solanum lycopersicum
Q84LQ6_SOLLC
I
Q84XB1_SOLLC
Solanum lycopersicum
Q84XB1_SOLLC
I
SapurV1A.0012s0580
Salix purpurea
SapurV1A.0012s0580
I
SapurV1A.0032s0470
Salix purpurea
SapurV1A.0032s0470
I
SapurV1A.0118s0170
Salix purpurea
SapurV1A.0118s0170
I
SapurV1A.1244s0010
Salix purpurea
SapurV1A.1244s0010
I
SapurV1A.1325s0040
Salix purpurea
SapurV1A.1325s0040
I
SapurV1A.2062s0030
Salix purpurea
SapurV1A.2062s0030
I
SapurV1A.3143s0020
Salix purpurea
SapurV1A.3143s0020
I
Sb03g037080
Sorghum bicolor
Sb03g037080
I
Sb06g028090
Sorghum bicolor
Sb06g028090
I
Sb09g024400
Sorghum bicolor
Sb09g024400
I
Si002729m.g
Setaria italica
Si002729m.g
I
Si010228m.g
Setaria italica
Si010228m.g
I
Si023088m.g
Setaria italica
Si023088m.g
I
Si023330m.g
Setaria italica
Si023330m.g
I
Solyc03g006320.1
Solanum lycopersicum
Solyc03g006320.1
I
Solyc07g053740.1
Solanum lycopersicum
Solyc07g053740.1
I
Solyc10g009110.1
Solanum lycopersicum
Solyc10g009110.1
I
TCM_008162
Theobroma cacao
TCM_008162
I
TCM_029820
Theobroma cacao
TCM_029820
I
TCM_031608
Theobroma cacao
TCM_031608
I
Thhalv10003431m.g
Eutrema salsugineum
Thhalv10003431m.g
I
Thhalv10008830m.g
Eutrema salsugineum
Thhalv10008830m.g
I
Thhalv10011796m.g
Eutrema salsugineum
Thhalv10011796m.g
I
Thhalv10021456m.g
Eutrema salsugineum
Thhalv10021456m.g
I
TRAES3BF075600050CFD_g
Triticum aestivum
TRAES3BF075600050CFD_g
I
VIT_10s0003g00140
Vitis vinifera
VIT_10s0003g00140
I
VIT_12s0028g03270
Vitis vinifera
VIT_12s0028g03270
I
VIT_19s0014g02240
Vitis vinifera
VIT_19s0014g02240
I