L596_g9277 (Steinernema carpocapsae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L596_g9277 T309031_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.889 0.629
nhr-34
M00690_2.00 		Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN		 PBM
Narasimhan et al.(2015)
pTH9907 		0.826 0.529
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.761 0.629
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.761 0.629
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.761 0.629
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.761 0.629
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.761 0.629
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.761 0.629
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.747 0.614
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.747 0.614
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.747 0.614
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.747 0.614
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.747 0.614
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.747 0.614
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.747 0.614
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.747 0.614
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.747 0.614
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.747 0.614
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.747 0.614
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.747 0.614
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.747 0.614
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.747 0.614
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.747 0.614
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.747 0.614
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.747 0.614
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.747 0.614
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.747 0.614
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.747 0.614
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.747 0.614
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.747 0.614
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.747 0.614
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.747 0.614
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.747 0.614
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.747 0.614
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.747 0.614
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.747 0.614
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.747 0.614
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.747 0.614
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.747 0.614
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.747 0.614
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L596_g9277.t1 Nuclear receptor 21 90

Links

Other Nuclear receptor family TFs
Other Steinernema carpocapsae TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL003602 Aedes aegypti AAEL003602 N 0.000
AALB005765 Anopheles albimanus AALB005765 N 0.000
AARA007771 Anopheles arabiensis AARA007771 N 0.000
AATE006171 Anopheles atroparvus AATE006171 N 0.000
ACHR001790 Anopheles christyi ACHR001790 N 0.000
ACUA006984 Anopheles culicifacies ACUA006984 N 0.000
ADIR008055 Anopheles dirus ADIR008055 N 0.000
AEPI001699 Anopheles epiroticus AEPI001699 N 0.000
AFAF012484 Anopheles farauti AFAF012484 N 0.000
AFUN008026 Anopheles funestus AFUN008026 N 0.000
AGAP007109 Anopheles gambiae AGAP007109 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
AMAM024265 Anopheles maculatus AMAM024265 N 0.000
AMEC009079 Anopheles melas AMEC009079 N 0.000
AMEC019433 Anopheles melas AMEC019433 N 0.000
AMEM014597 Anopheles merus AMEM014597 N 0.000
AMIN011248 Anopheles minimus AMIN011248 N 0.000
AQUA002036 Anopheles quadriannulatus AQUA002036 N 0.000
ASIS021384 Anopheles sinensis ASIS021384 N 0.000
ASTEI06883 Anopheles stephensi ASTEI06883 N 0.000
BGIBMGA012741 Bombyx mori BGIBMGA012741 N 0.000
CapteG221467 Capitella teleta CapteG221467 N 0.000
CPIJ004963 Culex quinquefasciatus CPIJ004963 N 0.000
CpipJ_CPIJ004963 Culex pipiens CpipJ_CPIJ004963 N 0.000
ENSAMXG00000020060 Astyanax mexicanus ENSAMXG00000020060 N 0.000
ENSCSAG00000004478 Chlorocebus sabaeus ENSCSAG00000004478 N 0.000
ENSECAG00000017767 Equus caballus ENSECAG00000017767 N 0.000
ENSFCAG00000026794 Felis catus ENSFCAG00000026794 N 0.000
ENSGALG00000026560 Gallus gallus ENSGALG00000026560 N 0.000
ENSGMOG00000016370 Gadus morhua ENSGMOG00000016370 N 0.000
ENSLOCG00000007226 Lepisosteus oculatus ENSLOCG00000007226 N 0.000
ENSMEUG00000015872 Macropus eugenii ENSMEUG00000015872 N 0.000
ENSMPUG00000006558 Mustela putorius furo ENSMPUG00000006558 N 0.000
ENSNLEG00000008504 Nomascus leucogenys ENSNLEG00000008504 N 0.000
ENSOARG00000018972 Ovis aries ENSOARG00000018972 N 0.000
ENSOGAG00000026262 Otolemur garnettii ENSOGAG00000026262 N 0.000
ENSONIG00000014038 Oreochromis niloticus ENSONIG00000014038 N 0.000
ENSP00000406998 Macaca fascicularis ENSP00000406998 N 0.000
ENSPANG00000024349 Papio anubis ENSPANG00000024349 N 0.000
ENSPFOG00000011716 Poecilia formosa ENSPFOG00000011716 N 0.000
ENSPMAG00000005756 Petromyzon marinus ENSPMAG00000005756 N 0.000
ENSPPYG00000014879 Pongo abelii ENSPPYG00000014879 N 0.000
ENSSHAG00000018147 Sarcophilus harrisii ENSSHAG00000018147 N 0.000
ENSSTOG00000015688 Ictidomys tridecemlineatus ENSSTOG00000015688 N 0.000
ENSXMAG00000009993 Xiphophorus maculatus ENSXMAG00000009993 N 0.000
fgenesh2_pg.scaffold_282000018 Branchiostoma floridae fgenesh2_pg.scaffold_282000018 N 0.000
HMEL017852 Heliconius melpomene HMEL017852 N 0.000
ISCW009928 Ixodes scapularis ISCW009928 N 0.000
KGM_11907 Danaus plexippus KGM_11907 N 0.000
L798_05037 Zootermopsis nevadensis L798_05037 N 0.000
LCUP008185 Lucilia cuprina LCUP008185 N 0.000
LDEC001191 Leptinotarsa decemlineata LDEC001191 N 0.000
LotgiG69958 Lottia gigantea LotgiG69958 N 0.000
MCINX010301 Melitaea cinxia MCINX010301 N 0.000
MDOA007546 Musca domestica MDOA007546 N 0.000
Ocbimv22006527m.g Octopus bimaculoides Ocbimv22006527m.g N 0.000
Ogr08710 Ophisaurus gracilis Ogr08710 N 0.000
PHUM271650 Pediculus humanus PHUM271650 N 0.000
PPAI006396 Phlebotomus papatasi PPAI006396 N 0.000
PRDM8 Tupaia belangeri ENSTBEG00000006138 N 0.000
PRDM8 Myotis lucifugus ENSMLUG00000030190 N 0.000
PRDM8 Macaca mulatta ENSMMUG00000003338 N 0.000
PRDM8 Monodelphis domestica ENSMODG00000020789 N 0.000
Prdm8 Mus musculus ENSMUSG00000035456 N 0.000
PRDM8 Gorilla gorilla ENSGGOG00000007501 N 0.000
PRDM8 Procavia capensis ENSPCAG00000001081 N 0.000
Prdm8 Rattus norvegicus ENSRNOG00000002004 N 0.000
PRDM8 Sorex araneus ENSSARG00000009823 N 0.000
PRDM8 Homo sapiens ENSG00000152784 N 0.000
PRDM8 Dasypus novemcinctus ENSDNOG00000011667 N 0.000
prdm8 Xenopus tropicalis XB-GENE-984391 N 0.000
PRDM8 Cavia porcellus ENSCPOG00000019738 N 0.000
PRDM8 Callithrix jacchus ENSCJAG00000015064 N 0.000
PRDM8 Canis familiaris ENSCAFG00000008881 N 0.000
PRDM8 Anolis carolinensis ENSACAG00000010106 N 0.000
prdm8b Oryzias latipes ENSORLG00000017786 N 0.000
prdm8b Danio rerio ENSDARG00000054683 N 0.000
prdm8b Tetraodon nigroviridis ENSTNIG00000016712 N 0.000
prdm8b Takifugu rubripes ENSTRUG00000001003 N 0.000
Pvit_15291 Pogona vitticeps Pvit_15291 N 0.000
Sakowv30017448m.g Saccoglossus kowalevskii Sakowv30017448m.g N 0.000
SMAR006435 Strigamia maritima SMAR006435 N 0.000
SMU15028407 Schmidtea mediterranea SMU15028407 N 0.000
TC013073 Tribolium castaneum TC013073 N 0.000
tetur11g03890 Tetranychus urticae tetur11g03890 N 0.000