PTRK_0000720500 (Parastrongyloides trichosuri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 PTRK_0000720500 T310017_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.991 0.857
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.953 0.671
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.803 0.543
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.803 0.543
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.803 0.543
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.803 0.543
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.803 0.543
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.803 0.543
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.803 0.543
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.803 0.543
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.803 0.543
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.803 0.543
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.803 0.543
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.803 0.543
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.803 0.543
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.803 0.543
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.803 0.543
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.803 0.543
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.803 0.543
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.803 0.543
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.803 0.543
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.803 0.543
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.803 0.543
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.803 0.543
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.803 0.543
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.803 0.543
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.803 0.543
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.803 0.543
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.803 0.543
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.803 0.543
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.803 0.543
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.803 0.543
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.803 0.543
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.803 0.543
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.790 0.557
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.790 0.557
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.790 0.557
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.790 0.557
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.790 0.557
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.790 0.557
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.789 0.529
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.789 0.529
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.789 0.529
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.789 0.529
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.789 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000720500.1 Nuclear receptor 4 73

Links

Other Nuclear receptor family TFs
Other Parastrongyloides trichosuri TFs

561 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_07754 Capronia epimyces A1O3_07754 I
AB07764.1 Alternaria brassicicola AB07764.1 N
ACLA_050890 Aspergillus clavatus CADACLAG00004878 N
AFUA_4G11850 Aspergillus fumigatus CADAFUAG00008171 N
ANIA_05533 Aspergillus nidulans CADANIAG00003549 N
AUEXF2481DRAFT_152 Aureobasidium subglaciale AUEXF2481DRAFT_152 N
BAUCODRAFT_118634 Baudoinia compniacensis BAUCODRAFT_118634 I
Bcin11g04510 Botrytis cinerea Bcin11g04510 N
BDDG_05568 Blastomyces dermatitidis BDDG_05568 N
BGHDH14_bgh04332 Blumeria graminis BGHDH14_bgh04332 N
CADAFLAG00002161 Aspergillus flavus CADAFLAG00002161 N
CGGC5_7996 Colletotrichum gloeosporioides CGGC5_7996 N
CIMG_01608 Coccidioides immitis CIMG_01608 N
Cob_05618 Colletotrichum orbiculare Cob_05618 N
COCCADRAFT_7354 Bipolaris zeicola COCCADRAFT_7354 N
COCMIDRAFT_6100 Bipolaris oryzae COCMIDRAFT_6100 N
COCSADRAFT_229975 Bipolaris sorokiniana COCSADRAFT_229975 N
COCVIDRAFT_27743 Bipolaris victoriae COCVIDRAFT_27743 N
CPC735_048660 Coccidioides posadasii CPC735_048660 N
CPUR_07267 Claviceps purpurea CPUR_07267 N
CSUB01_03005 Colletotrichum sublineola CSUB01_03005 N
DOTSEDRAFT_68927 Dothistroma septosporum DOTSEDRAFT_68927 N
DRE_02202 Drechslerella stenobrocha DRE_02202 I
estExt_fgenesh1_pg.C_chr_10968 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10968 N
estExt_Genewise1.C_31830 Neurospora discreta estExt_Genewise1.C_31830 N
EV44_g1635 Erysiphe necator EV44_g1635 N
e_gw1.00009.84.1 Aspergillus carbonarius e_gw1.00009.84.1 N
e_gw1.1.1647.1 Nectria haematococca e_gw1.1.1647.1 N
fgenesh1_pg.C_scaffold_1000879 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1000879 N
fgenesh1_pg.C_scaffold_6000005 Cochliobolus heterostrophus C5 fgenesh1_pg.C_scaffold_6000005 N
GGTG_09987 Gaeumannomyces graminis GGTG_09987 N
GLRG_10847 Colletotrichum graminicola GLRG_10847 N
GMDG_00534 Pseudogymnoascus destructans GMDG_00534 N
GSTUM_00011438001 Tuber melanosporum GSTUM_00011438001 N
H072_9722 Dactylellina haptotyla H072_9722 N
H101_00713 Trichophyton interdigitale H101_00713 N
H102_01651 Trichophyton rubrum H102_01651 N
H105_01667 Trichophyton soudanense H105_01667 N
HCBG_03369 Histoplasma capsulatum HCBG_03369 N
LEMA_P055840.1 Leptosphaeria maculans LEMA_P055840.1 N
M437DRAFT_77772 Aureobasidium melanogenum M437DRAFT_77772 N
M438DRAFT_349770 Aureobasidium pullulans M438DRAFT_349770 N
MAJ_08454 Metarhizium majus MAJ_08454 N
MANI_010211 Metarhizium anisopliae MANI_010211 N
MBM_05784 Marssonina brunnea MBM_05784 N
MBR_09134 Metarhizium brunneum MBR_09134 N
MCYG_06310 Microsporum canis MCYG_06310 N
MCYG_06310 Arthroderma otae MCYG_06310 N
MGG_05153 Magnaporthe oryzae MGG_05153 I
MGG_08753 Magnaporthe oryzae MGG_08753 N
MGU_09793 Metarhizium guizhouense MGU_09793 N
MGYG_06755 Microsporum gypseum MGYG_06755 N
moc3 Schizosaccharomyces pombe SPAC821.07c I
MPH_05214 Macrophomina phaseolina MPH_05214 N
MYCFIDRAFT_76004 Pseudocercospora fijiensis MYCFIDRAFT_76004 N
Mycgr3G107324 Zymoseptoria tritici Mycgr3G107324 N
MYCTH_2299657 Myceliophthora thermophila MYCTH_2299657 N
NechaG30529 Fusarium solani NechaG30529 N
NEUTE1DRAFT_78259 Neurospora tetrasperma NEUTE1DRAFT_78259 N
NFIA_104380 Neosartorya fischeri CADNFIAG00009977 N
OCS_01600 Ophiocordyceps sinensis OCS_01600 I
OIDMADRAFT_122144 Oidiodendron maius OIDMADRAFT_122144 N
PAAG_02753 Paracoccidioides sp lutzii PAAG_02753 N
PABG_03226 Paracoccidioides brasiliensis PABG_03226 N
PAS_chr1-4_0290 Komagataella pastoris PAS_chr1-4_0290 N
Pc22g04960 Penicillium chrysogenum Pc22g04960 N
PCH_Pc22g04960 Penicillium rubens PCH_Pc22g04960 N
PDE_08558 Penicillium oxalicum PDE_08558 I
PDIP_42870 Penicillium digitatum PDIP_42870 N
PEX1_006710 Penicillium expansum PEX1_006710 N
PFICI_15376 Pestalotiopsis fici PFICI_15376 N
PGUG_01274 Candida guilliermondii PGUG_01274 N
PGUG_01274 Meyerozyma guilliermondii PGUG_01274 N
PITC_093240 Penicillium italicum PITC_093240 N
PMAA_041870 Talaromyces marneffei PMAA_041870 I
PMAA_041870 Penicillium marneffei PMAA_041870 I
PTRG_00667 Pyrenophora triticirepentis PTRG_00667 N
PTT_18058 Pyrenophora teres PTT_18058 N
PV07_03576 Cladophialophora immunda PV07_03576 N
PV09_02355 Verruconis gallopava PV09_02355 N
PVAR5_3215 Byssochlamys spectabilis PVAR5_3215 I
SAPIO_CDS0057 Scedosporium apiospermum SAPIO_CDS0057 N
SEPMUDRAFT_146288 Sphaerulina musiva SEPMUDRAFT_146288 N
SETTUDRAFT_165742 Setosphaeria turcica SETTUDRAFT_165742 N
SMAC_03029 Sordaria macrospora SMAC_03029 N
SNOG_06887 Stagonospora nodorum SNOG_06887 N
SNOG_06887 Phaeosphaeria nodorum SNOG_06887 N
TEQG_07547 Trichophyton equinum TEQG_07547 N
TESG_07050 Trichophyton tonsurans TESG_07050 N
THITE_2115656 Thielavia terrestris THITE_2115656 I
THITE_2116108 Thielavia terrestris THITE_2116108 N
TRIREDRAFT_55274 Trichoderma reesei TRIREDRAFT_55274 I
TSTA_076120 Talaromyces stipitatus TSTA_076120 I
U727_00433920131 Penicillium solitum U727_00433920131 N
UCRNP2_5943 Neofusicoccum parvum UCRNP2_5943 N
V499_04709 Pseudogymnoascus pannorum V499_04709 N
VHEMI02684 Torrubiella hemipterigena VHEMI02684 N
W97_00715 Coniosporium apollinis W97_00715 N
X797_002926 Metarhizium robertsii X797_002926 N
X797_004155 Metarhizium robertsii X797_004155 N
XP_002490409.1 Pichia pastoris XP_002490409.1 N
Z517_01120 Fonsecaea pedrosoi Z517_01120 N