CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SBAD_0000391501 *(Soboliphyme baturini)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00105 (zf-C4)	IPR001628	SBAD_0000391501	T310153_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hnf4a M00182_2.00	Mus musculus	NNRGKYMRNN	NNYKRMCYNN	PBM Badis et al.(2009) Hnf4a_2640	0.979	0.729
HNF4A M03357_2.00	Homo sapiens	RWTGRACTTTGSACYB	VRGTSCAAAGTYCAWY	SELEX Jolma et al.(2013) HNF4A_1	0.979	0.729
HNF4A M03358_2.00	Homo sapiens	RRGGKCAAAGTCCRBN	NVYGGACTTTGMCCYY	SELEX Jolma et al.(2013) HNF4A_2	0.979	0.729
HNF4A M03359_2.00	Homo sapiens	NDTGGACTTTGDACYB	VRGTHCAAAGTCCAHN	SELEX Jolma et al.(2013) HNF4A_3	0.979	0.729
HNF4A M03360_2.00	Homo sapiens	RRGGTCAAAGKTCA	TGAMCTTTGACCYY	SELEX Jolma et al.(2013) HNF4A_4	0.979	0.729
HNF4A M03361_2.00	Homo sapiens	VRGGTCAAAGTCCANN	NNTGGACTTTGACCYB	SELEX Jolma et al.(2013) HNF4A_5	0.979	0.729
HNF4A M03362_2.00	Homo sapiens	RRGTYCAAAGKTCAH	DTGAMCTTTGRACYY	SELEX Jolma et al.(2013) HNF4A_6	0.979	0.729
Hnf4a M03426_2.00	Mus musculus	RRGGTCAAAGTCCANN	NNTGGACTTTGACCYY	SELEX Jolma et al.(2013) Hnf4a_1	0.979	0.729
HNF4A M05573_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_1	0.979	0.729
HNF4A M05574_2.00	Homo sapiens	RRGGTCAAAGTCCAH	DTGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_2	0.979	0.729
HNF4A M05575_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_3	0.979	0.729
HNF4A M05576_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_4	0.979	0.729
HNF4A M08219_2.00	Homo sapiens	VRGDBCAAAGKYCAN	NTGRMCTTTGVHCYB	ChIP-seq Contrino et al.(2012) Mv81	0.979	0.729
HNF4A M08220_2.00	Homo sapiens	AGTCCA	TGGACT	ChIP-seq Contrino et al.(2012) Mv82	0.979	0.729
HNF4A M09268_2.00	Homo sapiens	VRGKNCAAAGTYCA	TGRACTTTGNMCYB	Misc Kulakovskiy et al.(2013) HNF4A_HUMAN.H11MO.0.A	0.979	0.729
Hnf4a M09308_2.00	Mus musculus	NRGKBCAAAGTYCA	TGRACTTTGVMCYN	Misc Kulakovskiy et al.(2013) HNF4A_MOUSE.H11MO.0.A	0.979	0.729
HNF4A M09605_2.00	Homo sapiens	NNVRGDNCAAAGKYCA	TGRMCTTTGNHCYBNN	Misc Heinz et al.(2010) HepG2-HNF4a_GSE25021	0.979	0.729
HNF4A M11105_2.00	Homo sapiens	VRGGNCAAAGKYCRB	VYGRMCTTTGNCCYB	Transfac Matys et al.(2006) V$HNF4_01_B	0.979	0.729
HNF4A M11106_2.00	Homo sapiens	NNNRGDBYAAAGKBCANND	HNNTGVMCTTTRVHCYNNN	Transfac Matys et al.(2006) V$HNF4_01	0.979	0.729
HNF4A M11107_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_09	0.979	0.729
HNF4A M11108_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_10	0.979	0.729
HNF4A M11109_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4ALPHA_Q6	0.979	0.729
HNF4A M11110_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q3	0.979	0.729
HNF4A M11111_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q6_01	0.979	0.729
HNF4A M11112_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_01	0.979	0.729
HNF4A M11113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_02	0.979	0.729
HNF4A M11114_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_03	0.979	0.729
HNF4A M11115_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_04	0.979	0.729
HNF4A M05577_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_1	0.979	0.729
HNF4A M05578_2.00	Homo sapiens	RRGGTCAAAGTCCRN	NYGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_2	0.979	0.729
HNF4A M05579_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_3	0.979	0.729
HNF4A M05580_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_4	0.979	0.729
HNF4G M08155_2.00	Homo sapiens	NVRGDNCAAAGKYCA	TGRMCTTTGNHCYBN	ChIP-seq Mathelier et al.(2014) MA0484.1	0.979	0.729
HNF4G M09287_2.00	Homo sapiens	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_HUMAN.H11MO.0.B	0.979	0.729
Hnf4g M09307_2.00	Mus musculus	VRGDNCAAAGKYCA	TGRMCTTTGNHCYB	Misc Kulakovskiy et al.(2013) HNF4G_MOUSE.H11MO.0.C	0.979	0.729
HNF4G M11155_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_01	0.979	0.729
HNF4G M11156_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4G_02	0.979	0.729
Hnf4 M03935_2.00	Drosophila melanogaster	RGGKCAAAGGTCA	TGACCTTTGMCCY	SELEX Nitta et al.(2015) Hnf4_1	0.978	0.757
Hnf4 M03936_2.00	Drosophila melanogaster	RGGKCAAAGTYCA	TGRACTTTGMCCY	SELEX Nitta et al.(2015) Hnf4_2	0.978	0.757
Hnf4 M03937_2.00	Drosophila melanogaster	RGTVCAAAGKTCR	YGAMCTTTGBACY	SELEX Nitta et al.(2015) Hnf4_3	0.978	0.757
Hnf4 M03938_2.00	Drosophila melanogaster	RTGRACTTTGGACY	RGTCCAAAGTYCAY	SELEX Nitta et al.(2015) Hnf4_4	0.978	0.757
Hnf4 M06428_2.00	Drosophila melanogaster	DKNKWSSNGGGGTCA	TGACCCCNSSWMNMH	B1H Zhu et al.(2011) Hnf4_SANGER_10_FBgn0004914	0.978	0.757
Hnf4 M06429_2.00	Drosophila melanogaster	GGGGTCAH	DTGACCCC	B1H Zhu et al.(2011) Hnf4_SANGER_5_FBgn0004914	0.978	0.757
nhr-49 M02413_2.00	Caenorhabditis elegans	NNNNWNHAN	NTDNWNNNN	PBM Weirauch et al.(2014) pTH5891	0.934	0.629
usp M03934_2.00	Drosophila melanogaster	ARRGGTCAAAGGTCA	TGACCTTTGACCYYT	SELEX Nitta et al.(2015) usp_1	0.869	0.657
usp M06426_2.00	Drosophila melanogaster	HRRGGTCAH	DTGACCYYD	B1H Zhu et al.(2011) usp_SANGER_5_FBgn0003964	0.869	0.657
usp M02709_2.00	Drosophila melanogaster	GGGGTCACSN	NSGTGACCCC	SELEX Mathelier et al.(2014) MA0016.1	0.869	0.657
usp M09689_2.00	Drosophila melanogaster	KRGGTCACG	CGTGACCYM	Misc Kulakovskiy et al.(2009) usp	0.869	0.657
usp M11191_2.00	Drosophila melanogaster	GRGGTCAYS	SRTGACCYC	Transfac Matys et al.(2006) I$CF1_01	0.869	0.657
usp M11192_2.00	Drosophila melanogaster	GGGGTCAYS	SRTGACCCC	Transfac Matys et al.(2006) I$CF1_02	0.869	0.657
Rxrg M02400_2.00	Mus musculus	VRGGTCAN	NTGACCYB	PBM Weirauch et al.(2014) pTH2880	0.868	0.643
RXRG M03375_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRG_1	0.868	0.643
RXRG M03376_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRG_2	0.868	0.643
RXRG M03377_2.00	Homo sapiens	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) RXRG_3	0.868	0.643
RXRG M03378_2.00	Homo sapiens	NRGGTCATGACCYC	GRGGTCATGACCYN	SELEX Jolma et al.(2013) RXRG_4	0.868	0.643
RXRG M02746_2.00	Homo sapiens	GGTCAAAGGTCA	TGACCTTTGACC	SELEX Jolma et al.(2010) RXRG_dimer	0.868	0.643
RXRG M05615_2.00	Homo sapiens	VRGGTCAAAGGTCAN	NTGACCTTTGACCYB	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_1	0.868	0.643
RXRG M05616_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRG_FL_HT-SELEX_2	0.868	0.643
RXRG M05879_2.00	Homo sapiens	RGGTBAARGGTBRND	HNYVACCYTTVACCY	SMiLE-seq Isakova et al.(2017) RXRg	0.868	0.643
RXRG M09280_2.00	Homo sapiens	NGTCAAAGGTCAH	DTGACCTTTGACN	Misc Kulakovskiy et al.(2013) RXRG_HUMAN.H11MO.0.B	0.868	0.643
Rxrg M09305_2.00	Mus musculus	VDDVDNSVNRAGKTCAAGGYCA	TGRCCTTGAMCTYNBSNHBHHB	Misc Kulakovskiy et al.(2013) RXRG_MOUSE.H11MO.0.B	0.868	0.643
RXRG M05617_2.00	Homo sapiens	DRGGTBAARGGTBRN	NYVACCYTTVACCYH	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_1	0.868	0.643
RXRG M05618_2.00	Homo sapiens	VRGGTCAYGACCYB	VRGGTCRTGACCYB	SELEX Yin et al.(2017) RXRG_FL_Methyl-HT-SELEX_2	0.868	0.643
Rxra M00181_2.00	Mus musculus	NRRGGTCANN	NNTGACCYYN	PBM Badis et al.(2009) Rxra_1035	0.862	0.629
RXRA M03408_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_1	0.862	0.629
RXRA M03409_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_2	0.862	0.629
RXRA M03410_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRA_3	0.862	0.629
RXRA M03411_2.00	Homo sapiens	RRGGTCATGACCYY	RRGGTCATGACCYY	SELEX Jolma et al.(2013) RXRA_4	0.862	0.629
Rxra M03421_2.00	Mus musculus	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) Rxra_1	0.862	0.629
Rxra M03422_2.00	Mus musculus	RGGTCATGACCY	RGGTCATGACCY	SELEX Jolma et al.(2013) Rxra_2	0.862	0.629
RXRA M05671_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_HT-SELEX	0.862	0.629
RXRA M05882_2.00	Homo sapiens	VRGKTBAAAGGTYRH	DYRACCTTTVAMCYB	SMiLE-seq Isakova et al.(2017) RXRa	0.862	0.629
RXRA M07993_2.00	Homo sapiens	NRRGGTCA	TGACCYYN	ChIP-seq Gerstein et al.(2012) H1-hESC_RXRA_HudsonAlpha	0.862	0.629
RXRA M07994_2.00	Homo sapiens	DDNNMRRGGTCANDN	NHNTGACCYYKNNHH	ChIP-seq Gerstein et al.(2012) HepG2_RXRA_HudsonAlpha	0.862	0.629
RXRA M09294_2.00	Homo sapiens	VDDDNDNNVRRRGGKCAVDV	BHBTGMCCYYYBNNHNHHHB	Misc Kulakovskiy et al.(2013) RXRA_HUMAN.H11MO.0.A	0.862	0.629
Rxra M09306_2.00	Mus musculus	DDVNNNNNRAGKTCAAGGYCA	TGRCCTTGAMCTYNNNNNBHH	Misc Kulakovskiy et al.(2013) RXRA_MOUSE.H11MO.0.A	0.862	0.629
RXRA M11182_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RXRA_07	0.862	0.629
RXRA M05672_2.00	Homo sapiens	RRGGTCAAAGGTCAH	DTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRA_eDBD_Methyl-HT-SELEX	0.862	0.629
Rxrb M02402_2.00	Mus musculus	VRGGTCAH	DTGACCYB	PBM Weirauch et al.(2014) pTH2861	0.859	0.614
RXRB M03415_2.00	Homo sapiens	RRGGTCAAAGGTCA	TGACCTTTGACCYY	SELEX Jolma et al.(2013) RXRB_1	0.859	0.614
Rxrb M03435_2.00	Mus musculus	GRGGTCAAAGGTCA	TGACCTTTGACCYC	SELEX Jolma et al.(2013) Rxrb_1	0.859	0.614
RXRB M05681_2.00	Homo sapiens	RRGGTCAAAGGTCAN	NTGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_1	0.859	0.614
RXRB M05682_2.00	Homo sapiens	RRGGTCAYGACCYY	RRGGTCRTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_HT-SELEX_2	0.859	0.614
RXRB M09297_2.00	Homo sapiens	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_HUMAN.H11MO.0.C	0.859	0.614
Rxrb M09330_2.00	Mus musculus	DSAGGTCASD	HSTGACCTSH	Misc Kulakovskiy et al.(2013) RXRB_MOUSE.H11MO.0.C	0.859	0.614
RXRB M05683_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_1	0.859	0.614
RXRB M05684_2.00	Homo sapiens	RRGGTCRYGACCYY	RRGGTCRYGACCYY	SELEX Yin et al.(2017) RXRB_eDBD_Methyl-HT-SELEX_2	0.859	0.614
Hr4 M06435_2.00	Drosophila melanogaster	AAGGTCA	TGACCTT	B1H Zhu et al.(2011) Hr4_SANGER_5_FBgn0023546	0.812	0.514
Q95WG3_ACRMI M02424_2.00	Acropora millepora	NRAGGTCAN	NTGACCTYN	PBM Weirauch et al.(2014) pTH6144	0.777	0.529
NR6A1 M05627_2.00	Homo sapiens	NNSAAGKTCAAGKKYRN	NYRMMCTTGAMCTTSNN	SELEX Yin et al.(2017) NR6A1_eDBD_HT-SELEX	0.765	0.557
NR6A1 M09284_2.00	Homo sapiens	AAGKTCAAGKTCA	TGAMCTTGAMCTT	Misc Kulakovskiy et al.(2013) NR6A1_HUMAN.H11MO.0.B	0.765	0.557
NR6A1 M11148_2.00	Homo sapiens	NKCAAGKTCAAGKTCANN	NNTGAMCTTGAMCTTGMN	Transfac Matys et al.(2006) V$GCNF_01	0.765	0.557
NR6A1 M11149_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$GCNF_Q3	0.765	0.557
NR6A1 M05628_2.00	Homo sapiens	NYSAAGKTCAAGKKCRN	NYGMMCTTGAMCTTSRN	SELEX Yin et al.(2017) NR6A1_eDBD_Methyl-HT-SELEX	0.765	0.557
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SBAD_0000391501-mRNA-1	Nuclear receptor	95	164	ITCVICKDRATGKHYGANSCDGCKGFFRRTIRKNQLYTCRFSRNCVIDKDKRNTCRYCRFQKCLKVGMKR

Links
Other Nuclear receptor family TFs
Other *Soboliphyme baturini* TFs

875 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

SBAD_0000391501 (Soboliphyme baturini) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

875 Related TFs

SBAD_0000391501 **(Soboliphyme baturini)
Nuclear receptor**