Alligator_sinensis_CCG011609.1 (Alligator sinensis)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00870 (P53) IPR011615 Alligator_sinensis_CCG011609.1 T311224_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TP73
M08035_2.00 		Homo sapiens
RCADGYHSDGRCWDG
CHWGYCHSDRCHTGY		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_rapamycin 		0.974 0.974
TP73
M08036_2.00 		Homo sapiens
DRRCAWGYHCWGRCWTGYH
DRCAWGYCWGDRCWTGYYH		 ChIP-seq
Chen et al.(2011)
GSE15704_TP73_vehicle 		0.974 0.974
TP73
M08037_2.00 		Homo sapiens
RCMDGYBCHNDCHKG
CMDGHNDGVRCHKGY		 ChIP-seq
Chen et al.(2011)
GSE18650_TP73 		0.974 0.974
TP73
M09336_2.00 		Homo sapiens
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_HUMAN.H11MO.0.A 		0.974 0.974
TP73
M11196_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P73_Q6 		0.974 0.974
Trp73
M03438_2.00 		Mus musculus
DRCAWGTYNNRACAYGYH
DRCRTGTYNNRACWTGYH		 SELEX
Jolma et al.(2013)
Tp73_1 		0.964 0.964
Trp73
M09339_2.00 		Mus musculus
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN		 Misc
Kulakovskiy et al.(2013)
P73_MOUSE.H11MO.0.B 		0.964 0.964
Trp63
M09338_2.00 		Mus musculus
DRCAWGYHCHRRCHTGYHN
NDRCADGYYDGDRCWTGYH		 Misc
Kulakovskiy et al.(2013)
P63_MOUSE.H11MO.0.B 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG011609.1 p53 43 239

Links

Other p53 family TFs
Other Alligator sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30034958m.g Saccoglossus kowalevskii Sakowv30034958m.g N
Sakowv30034964m.g Saccoglossus kowalevskii Sakowv30034964m.g N
Sakowv30036996m.g Saccoglossus kowalevskii Sakowv30036996m.g N
Sakowv30036998m.g Saccoglossus kowalevskii Sakowv30036998m.g N
Sakowv30037004m.g Saccoglossus kowalevskii Sakowv30037004m.g I
Sakowv30037007m.g Saccoglossus kowalevskii Sakowv30037007m.g I
Sakowv30037015m.g Saccoglossus kowalevskii Sakowv30037015m.g I
Sakowv30037030m.g Saccoglossus kowalevskii Sakowv30037030m.g N
Sakowv30037036m.g Saccoglossus kowalevskii Sakowv30037036m.g N
Sakowv30037039m.g Saccoglossus kowalevskii Sakowv30037039m.g I
Sakowv30037041m.g Saccoglossus kowalevskii Sakowv30037041m.g N
Sakowv30037043m.g Saccoglossus kowalevskii Sakowv30037043m.g N
Sakowv30037045m.g Saccoglossus kowalevskii Sakowv30037045m.g I
Sakowv30037050m.g Saccoglossus kowalevskii Sakowv30037050m.g I