CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cmyd_10015921 *(Chelonia mydas)* p53
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00870 (P53)	IPR011615	Cmyd_10015921	T311230_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TP73 M08035_2.00	Homo sapiens	RCADGYHSDGRCWDG	CHWGYCHSDRCHTGY	ChIP-seq Chen et al.(2011) GSE15704_TP73_rapamycin	0.969	0.969
TP73 M08036_2.00	Homo sapiens	DRRCAWGYHCWGRCWTGYH	DRCAWGYCWGDRCWTGYYH	ChIP-seq Chen et al.(2011) GSE15704_TP73_vehicle	0.969	0.969
TP73 M08037_2.00	Homo sapiens	RCMDGYBCHNDCHKG	CMDGHNDGVRCHKGY	ChIP-seq Chen et al.(2011) GSE18650_TP73	0.969	0.969
TP73 M09336_2.00	Homo sapiens	NDDCHWGYYCMRRCHTGYH	DRCADGYYKGRRCWDGHHN	Misc Kulakovskiy et al.(2013) P73_HUMAN.H11MO.0.A	0.969	0.969
TP73 M11196_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$P73_Q6	0.969	0.969
Trp73 M03438_2.00	Mus musculus	DRCAWGTYNNRACAYGYH	DRCRTGTYNNRACWTGYH	SELEX Jolma et al.(2013) Tp73_1	0.959	0.959
Trp73 M09339_2.00	Mus musculus	NDDCHWGYYCMRRCHTGYH	DRCADGYYKGRRCWDGHHN	Misc Kulakovskiy et al.(2013) P73_MOUSE.H11MO.0.B	0.959	0.959
Trp63 M09338_2.00	Mus musculus	DRCAWGYHCHRRCHTGYHN	NDRCADGYYDGDRCWTGYH	Misc Kulakovskiy et al.(2013) P63_MOUSE.H11MO.0.B	0.862	0.862
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cmyd_10015921	p53	43	239	PVIPSNADYPGPHHFEVTFQQSSTAKSATWTYSPLLKKLYCQIAKTCPIQIKVSTPPPPGTVIRAMPVYKKAEHVTEVVKRCPNHELGRDFNDGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVMVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLETRDGQVLGRRSFEGRICACPGRDRKADEDHY

Links
Other p53 family TFs
Other *Chelonia mydas* TFs

125 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSLOCG00000017878	Lepisosteus oculatus	ENSLOCG00000017878	I	0.000
ENSPFOG00000020615	Poecilia formosa	ENSPFOG00000020615	N	0.000
ENSXMAG00000020371	Xiphophorus maculatus	ENSXMAG00000020371	N	0.000
msgn1	Gasterosteus aculeatus	ENSGACG00000008864	N	0.000
msgn1	Gasterosteus aculeatus	ENSGACG00000008865	N	0.000
msgn1	Takifugu rubripes	ENSTRUG00000008888	N	0.000
Ogr03919	Ophisaurus gracilis	Ogr03919	I	0.000