SROB_0000566701 (Schistosoma rodhaini)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 SROB_0000566701 T312940_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.808 0.808
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.808 0.808
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.808 0.808
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.808 0.808
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.808 0.808
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.808 0.808
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.808 0.808
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.808 0.808
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.808 0.808
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.808 0.808
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.808 0.808
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.808 0.808
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.808 0.808
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.808 0.808
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.808 0.808
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.808 0.808
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.808 0.808
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.808 0.808
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.808 0.808
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.808 0.808
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.808 0.808
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.808 0.808
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.808 0.808
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.808 0.808
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.808 0.808
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.800 0.800
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.800 0.800
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.800 0.800
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.760 0.760
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.760 0.760
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0000566701-mRNA-1 Paired box 24 148

Links

Other Paired box family TFs
Other Schistosoma rodhaini TFs

299 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015007 Calypte anna Aan_R015007 N
Afo_R012887 Aptenodytes forsteri Afo_R012887 N
Brh_R000757 Buceros rhinoceros Brh_R000757 N
ENSAMEG00000019149 Ailuropoda melanoleuca ENSAMEG00000019149 N
ENSCPOG00000022575 Cavia porcellus ENSCPOG00000022575 N
ENSCSAG00000000386 Chlorocebus sabaeus ENSCSAG00000000386 N
ENSLACG00000001352 Latimeria chalumnae ENSLACG00000001352 N
ENSMEUG00000006670 Macropus eugenii ENSMEUG00000006670 N
ENSMICG00000012196 Microcebus murinus ENSMICG00000012196 N
ENSMPUG00000019997 Mustela putorius furo ENSMPUG00000019997 N
ENSNLEG00000005902 Nomascus leucogenys ENSNLEG00000005902 N
ENSOARG00000015061 Ovis aries ENSOARG00000015061 N
ENSP00000355162 Macaca fascicularis ENSP00000355162 N
ENSP00000355162-D1 Bos grunniens ENSP00000355162-D1 N
ENSPANG00000002290 Papio anubis ENSPANG00000002290 N
ENSPPYG00000015125 Pongo abelii ENSPPYG00000015125 N
ENSPSIG00000000540 Pelodiscus sinensis ENSPSIG00000000540 N
ENSSHAG00000007826 Sarcophilus harrisii ENSSHAG00000007826 N
ENSTSYG00000006216 Tarsius syrichta ENSTSYG00000006216 N
Gfo_R010567 Geospiza fortis Gfo_R010567 N
Tal_R011337 Tyto alba Tal_R011337 N
TIGD4 Pan troglodytes ENSPTRG00000016518 N
TIGD4 Pteropus vampyrus ENSPVAG00000013544 N
Tigd4 Rattus norvegicus ENSRNOG00000010741 N
TIGD4 Taeniopygia guttata ENSTGUG00000005046 N
TIGD4 Tursiops truncatus ENSTTRG00000016046 N
TIGD4 Procavia capensis ENSPCAG00000014843 N
Tigd4 Mus musculus ENSMUSG00000047819 N
TIGD4 Echinops telfairi ENSETEG00000011110 N
TIGD4 Bos taurus ENSBTAG00000009161 N
TIGD4 Canis familiaris ENSCAFG00000008168 N
TIGD4 Choloepus hoffmanni ENSCHOG00000003926 N
TIGD4 Callithrix jacchus ENSCJAG00000021812 N
TIGD4 Dasypus novemcinctus ENSDNOG00000006525 N
Tigd4 Dipodomys ordii ENSDORG00000008170 N
TIGD4 Equus caballus ENSECAG00000004395 N
TIGD4 Erinaceus europaeus ENSEEUG00000001554 N
TIGD4 Ochotona princeps ENSOPRG00000009824 N
TIGD4 Felis catus ENSFCAG00000028877 N
TIGD4 Homo sapiens ENSG00000169989 N
TIGD4 Gorilla gorilla ENSGGOG00000011836 N
TIGD4 Loxodonta africana ENSLAFG00000028471 N
TIGD4 Myotis lucifugus ENSMLUG00000028008 N
TIGD4 Macaca mulatta ENSMMUG00000018489 N
TIGD4 Monodelphis domestica ENSMODG00000001071 N
TIGD4 Otolemur garnettii ENSOGAG00000005277 N