lcor (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000100908 T313541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.978 0.978
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.933 0.933
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.933 0.933
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.889 0.889
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.822 0.822
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.800 0.800
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000140998 Pipsqueak 482 527

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_05211 Cladophialophora psammophila A1O5_05211 N 0.000
A1O9_07021 Exophiala aquamarina A1O9_07021 N 0.000
ACRE_069230 Acremonium chrysogenum ACRE_069230 N 0.000
BBA_07453 Beauveria bassiana BBA_07453 N 0.000
BBA_08510 Beauveria bassiana BBA_08510 N 0.000
BDDG_08991 Blastomyces dermatitidis BDDG_08991 N 0.000
CGGC5_11092 Colletotrichum gloeosporioides CGGC5_11092 N 0.000
CH063_13215 Colletotrichum higginsianum CH063_13215 N 0.000
CHGG_00926 Chaetomium globosum CHGG_00926 N 0.000
CHGG_08269 Chaetomium globosum CHGG_08269 N 0.000
Cob_05129 Colletotrichum orbiculare Cob_05129 N 0.000
CSUB01_10231 Colletotrichum sublineola CSUB01_10231 N 0.000
estExt_fgenesh1_pg.C_240014 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_240014 N 0.000
e_gw1.00815.93.1 Aspergillus carbonarius e_gw1.00815.93.1 N 0.000
GLRG_07211 Colletotrichum graminicola GLRG_07211 N 0.000
HMPREF1120_04133 Exophiala dermatitidis HMPREF1120_04133 N 0.000
HMPREF1624_01576 Sporothrix schenckii HMPREF1624_01576 N 0.000
MAC_06004 Metarhizium acridum MAC_06004 N 0.000
MBM_08217 Marssonina brunnea MBM_08217 N 0.000
MBR_08937 Metarhizium brunneum MBR_08937 N 0.000
OCS_06132 Ophiocordyceps sinensis OCS_06132 N 0.000
OIDMADRAFT_120194 Oidiodendron maius OIDMADRAFT_120194 N 0.000
PEX1_051210 Penicillium expansum PEX1_051210 N 0.000
PODANS_3_4320 Podospora anserina PODANS_3_4320 N 0.000
PVAR5_1141 Byssochlamys spectabilis PVAR5_1141 N 0.000
SBOR_5781 Sclerotinia borealis SBOR_5781 N 0.000
V499_08790 Pseudogymnoascus pannorum V499_08790 N 0.000
X797_009461 Metarhizium robertsii X797_009461 N 0.000
Z517_03843 Fonsecaea pedrosoi Z517_03843 N 0.000
Z518_08432 Rhinocladiella mackenziei Z518_08432 N 0.000