Lcor (Rattus norvegicus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSRNOG00000042679 T313613_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000036836 Pipsqueak 350 395
ENSRNOP00000068372 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Rattus norvegicus TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011371 Aedes aegypti AAEL011371 N 0.000
AALB000386 Anopheles albimanus AALB000386 N 0.000
AARA012000 Anopheles arabiensis AARA012000 N 0.000
AATE011564 Anopheles atroparvus AATE011564 N 0.000
ACEP20262 Atta cephalotes ACEP20262 N 0.000
ACHR001520 Anopheles christyi ACHR001520 N 0.000
ACOM030990 Anopheles coluzzii ACOM030990 N 0.000
ACUA016707 Anopheles culicifacies ACUA016707 N 0.000
ADAC009616 Anopheles darlingi ADAC009616 N 0.000
ADIR000731 Anopheles dirus ADIR000731 N 0.000
AEPI000371 Anopheles epiroticus AEPI000371 N 0.000
AFAF013524 Anopheles farauti AFAF013524 N 0.000
AFUN009855 Anopheles funestus AFUN009855 N 0.000
AGAP007801 Anopheles gambiae AGAP007801 N 0.000
AMAM005791 Anopheles maculatus AMAM005791 N 0.000
AMEC005720 Anopheles melas AMEC005720 N 0.000
AMEM004251 Anopheles merus AMEM004251 N 0.000
AMIN006391 Anopheles minimus AMIN006391 N 0.000
ASTEI01654 Anopheles stephensi ASTEI01654 N 0.000
BGIBMGA013421 Bombyx mori BGIBMGA013421 N 0.000
Cflo_07829--XP_393735.3_APIME Camponotus floridanus Cflo_07829--XP_393735.3_APIME N 0.000
CPIJ016941 Culex quinquefasciatus CPIJ016941 N 0.000
CpipJ_CPIJ016941 Culex pipiens CpipJ_CPIJ016941 N 0.000
GA12711 Drosophila pseudoobscura FBgn0072757 N 0.000
GB44976 Apis mellifera GB44976 N 0.000
GH13383 Drosophila grimshawi FBgn0120859 N 0.000
GI17625 Drosophila mojavensis FBgn0140369 N 0.000
GJ17539 Drosophila virilis FBgn0204709 N 0.000
GK24157 Drosophila willistoni FBgn0226119 N 0.000
GL19569 Drosophila persimilis FBgn0157167 N 0.000
HMEL016601 Heliconius melpomene HMEL016601 N 0.000
LCUP005662 Lucilia cuprina LCUP005662 N 0.000
LDEC011960 Leptinotarsa decemlineata LDEC011960 N 0.000
LLOJ007416 Lutzomyia longipalpis LLOJ007416 N 0.000
MCINX006210 Melitaea cinxia MCINX006210 N 0.000
MDOA013595 Musca domestica MDOA013595 N 0.000
MESCA004747 Megaselia scalaris MESCA004747 N 0.000
NV10599 Nasonia vitripennis NV10599 N 0.000
SINV19899 Solenopsis invicta SINV19899 N 0.000
TC001609 Tribolium castaneum TC001609 N 0.000