Alligator_sinensis_CCG006744.1 (Alligator sinensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Alligator_sinensis_CCG006744.1 T314416_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG006744.1 Pipsqueak 164 201
Alligator_sinensis_CCG006744.1 Pipsqueak 413 458

Links

Other Pipsqueak family TFs
Other Alligator sinensis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.34.5.1 Cochliobolus heterostrophus C5 e_gw1.34.5.1 N 0.000
MAC_05311 Metarhizium acridum MAC_05311 N 0.000
Pc20g11950 Penicillium chrysogenum Pc20g11950 N 0.000
PCH_Pc20g11950 Penicillium rubens PCH_Pc20g11950 N 0.000
PFICI_14999 Pestalotiopsis fici PFICI_14999 N 0.000