Brh_R001506 (Buceros rhinoceros)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Brh_R001506 T314418_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R001506 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Buceros rhinoceros TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011371 Aedes aegypti AAEL011371 N 0.000
AALB000386 Anopheles albimanus AALB000386 N 0.000
AARA012000 Anopheles arabiensis AARA012000 N 0.000
AATE011564 Anopheles atroparvus AATE011564 N 0.000
ACHR001520 Anopheles christyi ACHR001520 N 0.000
ACOM030990 Anopheles coluzzii ACOM030990 N 0.000
ACUA016707 Anopheles culicifacies ACUA016707 N 0.000
ADAC009616 Anopheles darlingi ADAC009616 N 0.000
ADIR000731 Anopheles dirus ADIR000731 N 0.000
AEPI000371 Anopheles epiroticus AEPI000371 N 0.000
AFAF013524 Anopheles farauti AFAF013524 N 0.000
AFUN009855 Anopheles funestus AFUN009855 N 0.000
AGAP007801 Anopheles gambiae AGAP007801 N 0.000
AMAM005791 Anopheles maculatus AMAM005791 N 0.000
AMEC005720 Anopheles melas AMEC005720 N 0.000
AMEM004251 Anopheles merus AMEM004251 N 0.000
AMIN006391 Anopheles minimus AMIN006391 N 0.000
AQUA003661 Anopheles quadriannulatus AQUA003661 N 0.000
ASTEI01654 Anopheles stephensi ASTEI01654 N 0.000
CPIJ016941 Culex quinquefasciatus CPIJ016941 N 0.000
CpipJ_CPIJ016941 Culex pipiens CpipJ_CPIJ016941 N 0.000
GA12711 Drosophila pseudoobscura FBgn0072757 N 0.000
GI17625 Drosophila mojavensis FBgn0140369 N 0.000
GJ17539 Drosophila virilis FBgn0204709 N 0.000
GK24157 Drosophila willistoni FBgn0226119 N 0.000
GL19569 Drosophila persimilis FBgn0157167 N 0.000
LCUP005662 Lucilia cuprina LCUP005662 N 0.000
LDEC011960 Leptinotarsa decemlineata LDEC011960 N 0.000
LLOJ007416 Lutzomyia longipalpis LLOJ007416 N 0.000
MDOA013595 Musca domestica MDOA013595 N 0.000
MESCA004747 Megaselia scalaris MESCA004747 N 0.000
TC001609 Tribolium castaneum TC001609 N 0.000