Cmyd_10003742 (Chelonia mydas)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Cmyd_10003742 T314433_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10003742 Pipsqueak 204 249

Links

Other Pipsqueak family TFs
Other Chelonia mydas TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_05211 Cladophialophora psammophila A1O5_05211 N 0.000
A1O9_00991 Exophiala aquamarina A1O9_00991 N 0.000
ACRE_069230 Acremonium chrysogenum ACRE_069230 N 0.000
BBA_08510 Beauveria bassiana BBA_08510 N 0.000
CADANGAG00001928 Aspergillus niger CADANGAG00001928 N 0.000
CADANGAG00006610 Aspergillus niger CADANGAG00006610 N 0.000
CCM_04496 Cordyceps militaris CCM_04496 N 0.000
CFIO01_05805 Colletotrichum fioriniae CFIO01_05805 N 0.000
CFIO01_05872 Colletotrichum fioriniae CFIO01_05872 N 0.000
CGGC5_11092 Colletotrichum gloeosporioides CGGC5_11092 N 0.000
CH063_00115 Colletotrichum higginsianum CH063_00115 N 0.000
CH063_13215 Colletotrichum higginsianum CH063_13215 N 0.000
COCC4DRAFT_64454 Bipolaris maydis COCC4DRAFT_64454 N 0.000
COCMIDRAFT_6077 Bipolaris oryzae COCMIDRAFT_6077 N 0.000
CSUB01_08465 Colletotrichum sublineola CSUB01_08465 N 0.000
CSUB01_10231 Colletotrichum sublineola CSUB01_10231 N 0.000
estExt_fgenesh1_pg.C_240014 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_240014 N 0.000
e_gw1.00815.93.1 Aspergillus carbonarius e_gw1.00815.93.1 N 0.000
e_gw1.34.5.1 Cochliobolus heterostrophus C5 e_gw1.34.5.1 N 0.000
F503_02724 Ophiostoma piceae uamh F503_02724 N 0.000
FFUJ_14523 Fusarium fujikuroi FFUJ_14523 N 0.000
fgenesh1_pg.00082_#_23 Aspergillus carbonarius fgenesh1_pg.00082_#_23 N 0.000
fgenesh1_pg.C_scaffold_9000410 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000410 N 0.000
FOXG_02565 Fusarium oxysporum FOXG_02565 N 0.000
gw1.00083.300.1 Aspergillus carbonarius gw1.00083.300.1 N 0.000
gw1.00643.3.1 Aspergillus carbonarius gw1.00643.3.1 N 0.000
HMPREF1120_04133 Exophiala dermatitidis HMPREF1120_04133 N 0.000
HMPREF1624_08182 Sporothrix schenckii HMPREF1624_08182 N 0.000
LEMA_P104170.1 Leptosphaeria maculans LEMA_P104170.1 N 0.000
M437DRAFT_47167 Aureobasidium melanogenum M437DRAFT_47167 N 0.000
MANI_026073 Metarhizium anisopliae MANI_026073 N 0.000
MBM_01548 Marssonina brunnea MBM_01548 N 0.000
MBM_08217 Marssonina brunnea MBM_08217 N 0.000
MBR_08937 Metarhizium brunneum MBR_08937 N 0.000
MCYG_00717 Microsporum canis MCYG_00717 N 0.000
MCYG_08710 Microsporum canis MCYG_08710 N 0.000
MCYG_08710 Arthroderma otae MCYG_08710 N 0.000
OIDMADRAFT_120194 Oidiodendron maius OIDMADRAFT_120194 N 0.000
OIDMADRAFT_193465 Oidiodendron maius OIDMADRAFT_193465 N 0.000
PEX1_051210 Penicillium expansum PEX1_051210 N 0.000
PMAA_001430 Penicillium marneffei PMAA_001430 N 0.000
PMAA_001430 Talaromyces marneffei PMAA_001430 N 0.000
PV06_05937 Exophiala oligosperma PV06_05937 N 0.000
PV08_00187 Exophiala spinifera PV08_00187 N 0.000
PV11_07373 Exophiala sideris PV11_07373 N 0.000
PVAR5_1141 Byssochlamys spectabilis PVAR5_1141 N 0.000
S40285_05664 Stachybotrys chlorohalonata S40285_05664 N 0.000
S40288_04224 Stachybotrys chartarum S40288_04224 N 0.000
SBOR_2893 Sclerotinia borealis SBOR_2893 N 0.000
SBOR_5781 Sclerotinia borealis SBOR_5781 N 0.000
SS1G_02247 Sclerotinia sclerotiorum SS1G_02247 N 0.000
TRIATDRAFT_281366 Trichoderma atroviride TRIATDRAFT_281366 N 0.000
TSTA_094290 Talaromyces stipitatus TSTA_094290 N 0.000
VDBG_02757 Verticillium alfalfae VDBG_02757 N 0.000
VDBG_02757 Verticillium albo atrum VDBG_02757 N 0.000
X797_005153 Metarhizium robertsii X797_005153 N 0.000
Z517_00801 Fonsecaea pedrosoi Z517_00801 N 0.000
Z518_08432 Rhinocladiella mackenziei Z518_08432 N 0.000