Ogr16502 (Ophisaurus gracilis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Ogr16502 T314460_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr16502 Pipsqueak 2036 2081

Links

Other Pipsqueak family TFs
Other Ophisaurus gracilis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011585 Calypte anna Aan_R011585 I 0.000
Afo_R007908 Aptenodytes forsteri Afo_R007908 I 0.000
Alligator_sinensis_CCG008027.1 Alligator sinensis Alligator_sinensis_CCG008027.1 I 0.000
Brh_R009272 Buceros rhinoceros Brh_R009272 I 0.000
Cmyd_10007723 Chelonia mydas Cmyd_10007723 I 0.000
ENSAMEG00000010499 Ailuropoda melanoleuca ENSAMEG00000010499 I 0.000
ENSAMXG00000008651 Astyanax mexicanus ENSAMXG00000008651 I 0.000
ENSBTAP00000028574-D1 Bos grunniens ENSBTAP00000028574-D1 I 0.000
ENSCSAG00000006757 Chlorocebus sabaeus ENSCSAG00000006757 I 0.000
ENSFALG00000012611 Ficedula albicollis ENSFALG00000012611 I 0.000
ENSGALG00000012277 Gallus gallus ENSGALG00000012277 I 0.000
ENSMEUG00000002984 Macropus eugenii ENSMEUG00000002984 I 0.000
ENSMICG00000011572 Microcebus murinus ENSMICG00000011572 I 0.000
ENSMMUG00000013915 Macaca mulatta ENSMMUG00000013915 I 0.000
ENSMMUP00000018288 Macaca fascicularis ENSMMUP00000018288 I 0.000
ENSMPUG00000013085 Mustela putorius furo ENSMPUG00000013085 I 0.000
ENSNLEG00000015068 Nomascus leucogenys ENSNLEG00000015068 I 0.000
ENSOARG00000015236 Ovis aries ENSOARG00000015236 I 0.000
ENSONIG00000019674 Oreochromis niloticus ENSONIG00000019674 I 0.000
ENSPANG00000020550 Papio anubis ENSPANG00000020550 I 0.000
ENSPFOG00000002983 Poecilia formosa ENSPFOG00000002983 I 0.000
ENSPFOG00000005759 Poecilia formosa ENSPFOG00000005759 I 0.000
ENSPPYG00000011816 Pongo abelii ENSPPYG00000011816 I 0.000
ENSSTOG00000025460 Ictidomys tridecemlineatus ENSSTOG00000025460 I 0.000
ENSXMAG00000012964 Xiphophorus maculatus ENSXMAG00000012964 I 0.000
Gfo_R004700 Geospiza fortis Gfo_R004700 I 0.000
MAFF Taeniopygia guttata ENSTGUG00000010431 I 0.000
maff Tetraodon nigroviridis ENSTNIG00000001100 I 0.000
MAFF Sus scrofa ENSSSCG00000030165 I 0.000
Maff Rattus norvegicus ENSRNOG00000012886 I 0.000
MAFF Tursiops truncatus ENSTTRG00000005618 I 0.000
MAFF Pan troglodytes ENSPTRG00000029431 I 0.000
MAFF Otolemur garnettii ENSOGAG00000027848 I 0.000
MAFF Meleagris gallopavo ENSMGAG00000015937 I 0.000
MAFF Canis familiaris ENSCAFG00000029842 I 0.000
MAFF Callithrix jacchus ENSCJAG00000011992 I 0.000
maff Danio rerio ENSDARG00000028957 I 0.000
Maff Dipodomys ordii ENSDORG00000013449 I 0.000
MAFF Echinops telfairi ENSETEG00000012984 I 0.000
MAFF Homo sapiens ENSG00000185022 D 0.000
MAFF Gorilla gorilla ENSGGOG00000021932 I 0.000
MAFF Loxodonta africana ENSLAFG00000022547 I 0.000
MAFF Myotis lucifugus ENSMLUG00000011358 I 0.000
MAFF Monodelphis domestica ENSMODG00000018732 I 0.000
Maff Mus musculus ENSMUSG00000042622 D 0.000
MAFF Oryctolagus cuniculus ENSOCUG00000006266 I 0.000
MAFF Anolis carolinensis ENSACAG00000008424 I 0.000
MAFF Bos taurus ENSBTAG00000021435 I 0.000
MAFF Procavia capensis ENSPCAG00000013370 I 0.000
MAFG Oryzias latipes ENSORLG00000012170 I 0.000
MAFK Pteropus vampyrus ENSPVAG00000013872 I 0.000
Ogr11652 Ophisaurus gracilis Ogr11652 I 0.000
Pvit_08359 Pogona vitticeps Pvit_08359 I 0.000