CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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REL
(
Loxodonta africana
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00554 (RHD_DNA_bind)
IPR011539
ENSLAFG00000013507
T317231_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
REL
M02710_2.00
Homo sapiens
BGGRNWTTCC
GGAAWNYCCV
SELEX
Mathelier et al.(2014)
MA0101.1
0.947
0.947
REL
M09350_2.00
Homo sapiens
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA
Misc
Kulakovskiy et al.(2013)
REL_HUMAN.H11MO.0.B
0.947
0.947
REL
M11235_2.00
Homo sapiens
BGGRNWTTCC
GGAAWNYCCV
Transfac
Matys et al.(2006)
V$CREL_01
0.947
0.947
REL
M11236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CREL_Q6
0.947
0.947
Rel
M09353_2.00
Mus musculus
TGKVMTTYCCCHDBH
DVHDGGGRAAKBMCA
Misc
Kulakovskiy et al.(2013)
REL_MOUSE.H11MO.0.A
0.917
0.917
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000011303
Rel
8
177
IEIIEQPRQRGMRFRYKCEGRSAGSIPGEHSTDSNRTYPSIQIMNYYGKGKVRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGQERRPLFFQNLGIRCVKKKEVKEAVISRIRAGINPFSAVPEQQLLDIEDCDLNVVRLCFQVFLPDEHGDLTTALTPVVSNPIYDN
Links
Other
Rel
family TFs
Other
Loxodonta africana
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SMAR015352
Strigamia maritima
SMAR015352
N
SNAPOd2T00005164001
Oikopleura dioica
SNAPOd2T00005164001
N
SNAPOd2T00016002001
Oikopleura dioica
SNAPOd2T00016002001
N
TTHERM_00257230
Tetrahymena thermophila
TTHERM_00257230
N