Gfo_R009589 (Geospiza fortis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Gfo_R009589 T317787_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfatc2
M09357_2.00 		Mus musculus
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_MOUSE.H11MO.0.C 		0.979 0.979
NFATC2
M02441_2.00 		Homo sapiens
WNTTTCCRHN
NDYGGAAANW		 PBM
Weirauch et al.(2014)
pTH9196 		0.972 0.972
NFATC2
M05705_2.00 		Homo sapiens
DTTTCCATGGAAAM
KTTTCCATGGAAAH		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_1 		0.972 0.972
NFATC2
M05706_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_2 		0.972 0.972
NFATC2
M09346_2.00 		Homo sapiens
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_HUMAN.H11MO.0.B 		0.972 0.972
NFATC2
M11221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q4 		0.972 0.972
NFATC2
M11222_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q5 		0.972 0.972
NFATC2
M11223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q6 		0.972 0.972
NFATC2
M08462_2.00 		Homo sapiens
TTTTCCA
TGGAAAA		 COMPILED
Mathelier et al.(2014)
MA0152.1 		0.972 0.972
NFATC2
M05707_2.00 		Homo sapiens
NTTTCCGCGGAAAN
NTTTCCGCGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_1 		0.972 0.972
NFATC2
M05708_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_2 		0.972 0.972
NFATC1
M02443_2.00 		Meleagris gallopavo
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8315 		0.860 0.860
Nfatc1
M09360_2.00 		Mus musculus
KABTCANWBTTTCCW
WGGAAAVWNTGAVTM		 Misc
Kulakovskiy et al.(2013)
NFAC1_MOUSE.H11MO.0.A 		0.860 0.860
nfatc1
M02446_2.00 		Xenopus tropicalis
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8557 		0.846 0.846
NFATC3
M02440_2.00 		Homo sapiens
DNTTTCCRNN
NNYGGAAANH		 PBM
Weirauch et al.(2014)
pTH9192 		0.839 0.839
NFATC3
M05693_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_1 		0.839 0.839
NFATC3
M05694_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_2 		0.839 0.839
NFATC3
M05695_2.00 		Homo sapiens
DYGGAAANNNNNNNTTTCCRH
DYGGAAANNNNNNNTTTCCRH		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_3 		0.839 0.839
NFATC3
M09343_2.00 		Homo sapiens
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_HUMAN.H11MO.0.B 		0.839 0.839
Nfatc3
M09359_2.00 		Mus musculus
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_MOUSE.H11MO.0.B 		0.839 0.839
NFATC3
M11217_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q3 		0.839 0.839
NFATC3
M11218_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q5 		0.839 0.839
NFATC3
M05696_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_1 		0.839 0.839
NFATC3
M05697_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_2 		0.839 0.839
NFATC3
M05698_2.00 		Homo sapiens
RYGGAAANHNNNDNTTTCCRY
RYGGAAANHNNNDNTTTCCRY		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_3 		0.839 0.839
NFATC1
M02444_2.00 		Monodelphis domestica
NNDTTCCDNN
NNHGGAAHNN		 PBM
Weirauch et al.(2014)
pTH8401 		0.832 0.832
NFATC4
M01306_2.00 		Homo sapiens
NNNWWWVYRN
NYRBWWWNNN		 PBM
Lambert et al.(2019)
pTH9347 		0.818 0.818
NFATC1
M03449_2.00 		Homo sapiens
HKGRAAADDNWBTTTCCAYN
NRTGGAAAVWNHHTTTYCMD		 SELEX
Jolma et al.(2013)
NFATC1_1 		0.818 0.818
NFATC1
M03450_2.00 		Homo sapiens
TTTCCAYWRYGGAAA
TTTCCRYWRTGGAAA		 SELEX
Jolma et al.(2013)
NFATC1_2 		0.818 0.818
NFATC1
M03451_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Jolma et al.(2013)
NFATC1_3 		0.818 0.818
NFATC1
M02747_2.00 		Homo sapiens
DTTCCRYGGAA
TTCCRYGGAAH		 SELEX
Jolma et al.(2010)
NFATc1_dimer 		0.818 0.818
NFATC1
M02748_2.00 		Homo sapiens
GGAANDTTCC
GGAAHNTTCC		 SELEX
Jolma et al.(2010)
NFATc1_dimer_type2 		0.818 0.818
NFATC1
M02749_2.00 		Homo sapiens
WDTTTCCAY
RTGGAAAHW		 SELEX
Jolma et al.(2010)
NFATc1_monomer 		0.818 0.818
NFATC1
M05711_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_1 		0.818 0.818
NFATC1
M05712_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_2 		0.818 0.818
NFATC4
M05701_2.00 		Homo sapiens
DBTTTCCRYN
NRYGGAAAVH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_1 		0.818 0.818
NFATC4
M05702_2.00 		Homo sapiens
NKTTCCATGGAAMV
BKTTCCATGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_2 		0.818 0.818
NFATC1
M09349_2.00 		Homo sapiens
HBYHWBWBTTTCCWB
VWGGAAAVWVWDRVD		 Misc
Kulakovskiy et al.(2013)
NFAC1_HUMAN.H11MO.0.B 		0.818 0.818
NFATC4
M09345_2.00 		Homo sapiens
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_HUMAN.H11MO.0.C 		0.818 0.818
Nfatc4
M09354_2.00 		Mus musculus
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_MOUSE.H11MO.0.C 		0.818 0.818
NFATC1
M09625_2.00 		Homo sapiens
WBTTTCCAYY
RRTGGAAAVW		 Misc
Heinz et al.(2010)
Jurkat-NFATC1_Jolma_et_al. 		0.818 0.818
NFATC1
M11232_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q4 		0.818 0.818
NFATC1
M11233_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5_01 		0.818 0.818
NFATC1
M11234_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5 		0.818 0.818
NFATC4
M11219_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3_01 		0.818 0.818
NFATC4
M11220_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3 		0.818 0.818
NFATC1
M05713_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_1 		0.818 0.818
NFATC1
M05714_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_2 		0.818 0.818
NFATC4
M05703_2.00 		Homo sapiens
DNTTTCCRYN
NRYGGAAANH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_1 		0.818 0.818
NFATC4
M05704_2.00 		Homo sapiens
NKTTCCRYGGAAMN
NKTTCCRYGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_2 		0.818 0.818
ENSTNIG00000018271
M02445_2.00 		Tetraodon nigroviridis
DNDTTCCRNN
NNYGGAAHNH		 PBM
Weirauch et al.(2014)
pTH9005 		0.797 0.797
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009589 Rel 365 525

Links

Other Rel family TFs
Other Geospiza fortis TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG000360.1 Alligator sinensis Alligator_sinensis_CCG000360.1 N 0.000
Cflo_09545--XP_001122634.1_APIME Camponotus floridanus Cflo_09545--XP_001122634.1_APIME N 0.000
CGI_10015535 Crassostrea gigas CGI_10015535 N 0.000
CLEC008013 Cimex lectularius CLEC008013 N 0.000
Cmyd_10002800 Chelonia mydas Cmyd_10002800 N 0.000
Cmyd_10009563 Chelonia mydas Cmyd_10009563 N 0.000
DAPPUDRAFT_227979 Daphnia pulex DAPPUDRAFT_227979 N 0.000
ENSAMXG00000001669 Astyanax mexicanus ENSAMXG00000001669 N 0.000
ENSAMXG00000002921 Astyanax mexicanus ENSAMXG00000002921 N 0.000
ENSAMXG00000012951 Astyanax mexicanus ENSAMXG00000012951 N 0.000
ENSAMXG00000018584 Astyanax mexicanus ENSAMXG00000018584 N 0.000
ENSAPLG00000008246 Anas platyrhynchos ENSAPLG00000008246 N 0.000
ENSCSAG00000008646 Chlorocebus sabaeus ENSCSAG00000008646 N 0.000
ENSCSAG00000010467 Chlorocebus sabaeus ENSCSAG00000010467 N 0.000
ENSDORG00000013778 Dipodomys ordii ENSDORG00000013778 N 0.000
ENSFALG00000000366 Ficedula albicollis ENSFALG00000000366 N 0.000
ENSFALG00000005713 Ficedula albicollis ENSFALG00000005713 N 0.000
ENSGMOG00000015981 Gadus morhua ENSGMOG00000015981 N 0.000
ENSGMOG00000019517 Gadus morhua ENSGMOG00000019517 N 0.000
ENSLACG00000000721 Latimeria chalumnae ENSLACG00000000721 N 0.000
ENSLACG00000001591 Latimeria chalumnae ENSLACG00000001591 N 0.000
ENSLACG00000014122 Latimeria chalumnae ENSLACG00000014122 N 0.000
ENSLOCG00000001058 Lepisosteus oculatus ENSLOCG00000001058 N 0.000
ENSLOCG00000002219 Lepisosteus oculatus ENSLOCG00000002219 N 0.000
ENSLOCG00000007444 Lepisosteus oculatus ENSLOCG00000007444 N 0.000
ENSMEUG00000000468 Macropus eugenii ENSMEUG00000000468 N 0.000
ENSMICG00000015678 Microcebus murinus ENSMICG00000015678 N 0.000
ENSNLEG00000009426 Nomascus leucogenys ENSNLEG00000009426 N 0.000
ENSOARG00000019015 Ovis aries ENSOARG00000019015 N 0.000
ENSONIG00000007265 Oreochromis niloticus ENSONIG00000007265 N 0.000
ENSONIG00000012261 Oreochromis niloticus ENSONIG00000012261 N 0.000
ENSONIG00000016756 Oreochromis niloticus ENSONIG00000016756 N 0.000
ENSP00000246080-D1 Bos grunniens ENSP00000246080-D1 N 0.000
ENSPANG00000013449 Papio anubis ENSPANG00000013449 N 0.000
ENSPANG00000017828 Papio anubis ENSPANG00000017828 N 0.000
ENSPFOG00000005929 Poecilia formosa ENSPFOG00000005929 N 0.000
ENSPFOG00000007762 Poecilia formosa ENSPFOG00000007762 N 0.000
ENSPFOG00000018890 Poecilia formosa ENSPFOG00000018890 N 0.000
ENSPPYG00000018968 Pongo abelii ENSPPYG00000018968 N 0.000
ENSSHAG00000000809 Sarcophilus harrisii ENSSHAG00000000809 N 0.000
ENSSHAG00000007757 Sarcophilus harrisii ENSSHAG00000007757 N 0.000
ENSSSCG00000007202 Sus scrofa ENSSSCG00000007202 N 0.000
ENSTRUG00000005875 Takifugu rubripes ENSTRUG00000005875 N 0.000
ENSXMAG00000008863 Xiphophorus maculatus ENSXMAG00000008863 N 0.000
ENSXMAG00000011591 Xiphophorus maculatus ENSXMAG00000011591 N 0.000
Gfo_R005304 Geospiza fortis Gfo_R005304 N 0.000
L798_09207 Zootermopsis nevadensis L798_09207 N 0.000
NV13064 Nasonia vitripennis NV13064 N 0.000
Ocbimv22012140m.g Octopus bimaculoides Ocbimv22012140m.g N 0.000
Ogr05722 Ophisaurus gracilis Ogr05722 N 0.000
Ogr14597 Ophisaurus gracilis Ogr14597 N 0.000
Pvit_17687 Pogona vitticeps Pvit_17687 N 0.000
Pvit_18729 Pogona vitticeps Pvit_18729 N 0.000
SCX Anolis carolinensis ENSACAG00000012688 N 0.000
SCX Bos taurus ENSBTAG00000009816 N 0.000
SCX Cavia porcellus ENSCPOG00000022112 N 0.000
SCX Felis catus ENSFCAG00000026245 N 0.000
SCX Homo sapiens ENSG00000260428 N 0.000
Scx Mus musculus ENSMUSG00000034161 N 0.000
SCX Otolemur garnettii ENSOGAG00000028494 N 0.000
SCX Pteropus vampyrus ENSPVAG00000009266 N 0.000
Scx Rattus norvegicus ENSRNOG00000021812 N 0.000
SCX Tursiops truncatus ENSTTRG00000006425 N 0.000
scx Xenopus tropicalis XB-GENE-939816 N 0.000
scx.L Xenopus laevis XB-GENE-6253945 N 0.000
scx.S Xenopus laevis XB-GENE-17345241 N 0.000
scxa Danio rerio ENSDARG00000035695 N 0.000
scxa Gasterosteus aculeatus ENSGACG00000005863 N 0.000
scxa Oryzias latipes ENSORLG00000006041 N 0.000
scxa Tetraodon nigroviridis ENSTNIG00000019087 N 0.000
scxb Danio rerio ENSDARG00000011635 N 0.000
TC015754 Tribolium castaneum TC015754 N 0.000
TCF15 Anolis carolinensis ENSACAG00000011172 N 0.000
TCF15 Bos taurus ENSBTAG00000005750 N 0.000
TCF15 Canis familiaris ENSCAFG00000006930 N 0.000
TCF15 Callithrix jacchus ENSCJAG00000020866 N 0.000
TCF15 Danio rerio ENSDARG00000042857 N 0.000
tcf15 Danio rerio ENSDARG00000067544 N 0.000
TCF15 Dasypus novemcinctus ENSDNOG00000045300 N 0.000
TCF15 Equus caballus ENSECAG00000002411 N 0.000
TCF15 Echinops telfairi ENSETEG00000009717 N 0.000
TCF15 Homo sapiens ENSG00000125878 N 0.000
tcf15 Gasterosteus aculeatus ENSGACG00000011799 N 0.000
TCF15 Gallus gallus ENSGALG00000026276 N 0.000
TCF15 Gorilla gorilla ENSGGOG00000015133 N 0.000
TCF15 Loxodonta africana ENSLAFG00000001884 N 0.000
TCF15 Meleagris gallopavo ENSMGAG00000007877 N 0.000
TCF15 Microcebus murinus ENSMICG00000004647 N 0.000
TCF15 Myotis lucifugus ENSMLUG00000014021 N 0.000
TCF15 Macaca mulatta ENSMMUG00000022546 N 0.000
TCF15 Monodelphis domestica ENSMODG00000019526 N 0.000
Tcf15 Mus musculus ENSMUSG00000068079 N 0.000
TCF15 Oryctolagus cuniculus ENSOCUG00000000528 N 0.000
TCF15 Otolemur garnettii ENSOGAG00000015444 N 0.000
TCF15 Ochotona princeps ENSOPRG00000005163 N 0.000
tcf15 Oryzias latipes ENSORLG00000015082 N 0.000
TCF15 Pteropus vampyrus ENSPVAG00000012767 N 0.000
Tcf15 Rattus norvegicus ENSRNOG00000000012 N 0.000
TCF15 Taeniopygia guttata ENSTGUG00000006794 N 0.000
tcf15 Tetraodon nigroviridis ENSTNIG00000012471 N 0.000
tcf15 Takifugu rubripes ENSTRUG00000007678 N 0.000
TCF15 Tursiops truncatus ENSTTRG00000007058 N 0.000
tcf15 Xenopus tropicalis XB-GENE-488935 N 0.000
tcf15.L Xenopus laevis XB-GENE-6252545 N 0.000
XP_002937913 Xenopus tropicalis XP_002937913 N 0.000
YQE_10857 Dendroctonus ponderosae YQE_10857 N 0.000