ACEP24602 (Atta cephalotes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ACEP24602 T317998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.683 0.481
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.683 0.481
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.683 0.481
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.683 0.481
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.683 0.481
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.683 0.481
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.683 0.481
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.683 0.481
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.683 0.481
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.683 0.481
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.683 0.481
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.683 0.481
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.683 0.481
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.683 0.481
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.683 0.481
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACEP24602-PA RFX 105 183

Links

Other RFX family TFs
Other Atta cephalotes TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000014907 Ailuropoda melanoleuca ENSAMEG00000014907 I
ENSBTAG00000033445 Bos taurus ENSBTAG00000033445 I
ENSBTAG00000033874 Bos taurus ENSBTAG00000033874 N
ENSBTAG00000034444 Bos taurus ENSBTAG00000034444 N
ENSBTAG00000036343 Bos taurus ENSBTAG00000036343 I
ENSBTAG00000046035 Bos taurus ENSBTAG00000046035 N
ENSBTAG00000047120 Bos taurus ENSBTAG00000047120 I
ENSBTAP00000044770-D1 Bos grunniens ENSBTAP00000044770-D1 I
ENSBTAP00000045775-D1 Bos grunniens ENSBTAP00000045775-D1 N
ENSBTAP00000047496-D1 Bos grunniens ENSBTAP00000047496-D1 I
ENSCAFG00000023067 Canis familiaris ENSCAFG00000023067 I
ENSCAFG00000029639 Canis familiaris ENSCAFG00000029639 I
ENSDNOG00000031164 Dasypus novemcinctus ENSDNOG00000031164 I
ENSDNOG00000045058 Dasypus novemcinctus ENSDNOG00000045058 I
ENSECAG00000008677 Equus caballus ENSECAG00000008677 I
ENSECAG00000008708 Equus caballus ENSECAG00000008708 I
ENSECAG00000009495 Equus caballus ENSECAG00000009495 I
ENSOARG00000001582 Ovis aries ENSOARG00000001582 N
ENSOARG00000002777 Ovis aries ENSOARG00000002777 N
ENSOARG00000002879 Ovis aries ENSOARG00000002879 I
ENSOARG00000003920 Ovis aries ENSOARG00000003920 I
ENSOARG00000003931 Ovis aries ENSOARG00000003931 N
ENSOARG00000007974 Ovis aries ENSOARG00000007974 N
ENSOARG00000009065 Ovis aries ENSOARG00000009065 N
ENSOARG00000009275 Ovis aries ENSOARG00000009275 N
ENSOCUG00000025707 Oryctolagus cuniculus ENSOCUG00000025707 I
ENSSSCG00000012732 Sus scrofa ENSSSCG00000012732 I
ENSSTOG00000025684 Ictidomys tridecemlineatus ENSSTOG00000025684 I
yakG016733 Bos grunniens yakG016733 N