RFX4 (Felis catus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFCAG00000015618 T318242_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.783 1.000
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.783 1.000
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.783 1.000
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.783 1.000
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.783 1.000
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.783 0.987
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.717 0.696
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.714 0.684
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.714 0.684
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.714 0.684
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.713 0.671
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.713 0.671
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.712 0.646
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.712 0.646
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.712 0.646
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.712 0.646
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.712 0.646
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.712 0.646
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.712 0.646
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.712 0.646
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.712 0.646
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.712 0.646
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.712 0.646
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.711 0.646
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.710 0.620
GB41876
M02453_2.00 		Apis mellifera
GTHDCYANVN
NBNTRGHDAC		 PBM
Weirauch et al.(2014)
pTH9226 		0.709 0.658
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.708 0.608
Rfx
M03959_2.00 		Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN		 SELEX
Nitta et al.(2015)
Rfx_1 		0.708 0.608
Rfx
M03960_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_2 		0.708 0.608
Rfx
M03961_2.00 		Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV		 SELEX
Nitta et al.(2015)
Rfx_3 		0.708 0.608
Rfx
M03962_2.00 		Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC		 SELEX
Nitta et al.(2015)
Rfx_4 		0.708 0.608
Rfx
M03963_2.00 		Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC		 SELEX
Nitta et al.(2015)
Rfx_5 		0.708 0.608
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.705 0.633
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.705 0.633
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.705 0.633
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.705 0.633
RFX3
M03452_2.00 		Homo sapiens
NGTTRCCATGGHAACV
BGTTDCCATGGYAACN		 SELEX
Jolma et al.(2013)
RFX3_1 		0.704 0.646
RFX3
M03453_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Jolma et al.(2013)
RFX3_2 		0.704 0.646
RFX3
M02750_2.00 		Homo sapiens
GTTRYYATGG
CCATRRYAAC		 SELEX
Jolma et al.(2010)
RFX3_dimer 		0.704 0.646
RFX3
M05715_2.00 		Homo sapiens
NGTTRYYATRRYAACN
NGTTRYYATRRYAACN		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1 		0.704 0.646
RFX3
M05716_2.00 		Homo sapiens
BGTTGCTARGCAACS
SGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2 		0.704 0.646
RFX3
M09361_2.00 		Homo sapiens
BGTTRCCATGGYRN
NYRCCATGGYAACV		 Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B 		0.704 0.646
RFX3
M09627_2.00 		Homo sapiens
BNGTTGCCATGGCAAC
GTTGCCATGGCAACNV		 Misc
Heinz et al.(2010)
K562-RFX3_SRA012198 		0.704 0.646
RFX3
M05717_2.00 		Homo sapiens
BGTTRYYATRRYAACV
BGTTRYYATRRYAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1 		0.704 0.646
RFX3
M05718_2.00 		Homo sapiens
BGTTGCTARGCAACV
BGTTGCYTAGCAACV		 SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2 		0.704 0.646
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.704 0.608
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.703 0.633
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.703 0.633
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.703 0.633
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.703 0.633
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.703 0.633
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.703 0.633
PHUM046580
M02454_2.00 		Pediculus humanus
NGTHDCYANV
BNTRGHDACN		 PBM
Weirauch et al.(2014)
pTH9278 		0.700 0.646
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.651 0.430
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.651 0.430
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.651 0.430
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.651 0.430
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.651 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000014483 RFX 16 94

Links

Other RFX family TFs
Other Felis catus TFs

620 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29842.m003633 Ricinus communis 29842.m003633 I
ATML1 Arabidopsis thaliana AT4G21750 D
BGIOSGA014304 Oryza indica BGIOSGA014304 I
BGIOSGA014307 Oryza indica BGIOSGA014307 I
BGIOSGA027698 Oryza indica BGIOSGA027698 I
BGIOSGA031343 Oryza indica BGIOSGA031343 I
Bo01466s010 Brassica oleracea Bo01466s010 I
Bo1g025510 Brassica oleracea Bo1g025510 I
Bo3g048340 Brassica oleracea Bo3g048340 I
Bo3g163910 Brassica oleracea Bo3g163910 I
Bo5g005350 Brassica oleracea Bo5g005350 I
Bo7g107550 Brassica oleracea Bo7g107550 I
Bo8g115250 Brassica oleracea Bo8g115250 I
Bo9g066790 Brassica oleracea Bo9g066790 I
Bo9g077670 Brassica oleracea Bo9g077670 I
Bostr.10689s0126 Boechera stricta Bostr.10689s0126 I
Bostr.28243s0044 Boechera stricta Bostr.28243s0044 I
Bostr.2983s0029 Boechera stricta Bostr.2983s0029 I
Bra000807 Brassica rapa Bra000807 I
Bra013556 Brassica rapa Bra013556 I
Bra015401 Brassica rapa Bra015401 I
Bra017519 Brassica rapa Bra017519 I
Bra020872 Brassica rapa Bra020872 I
Bra024984 Brassica rapa Bra024984 I
Bra029527 Brassica rapa Bra029527 I
Bra032478 Brassica rapa Bra032478 I
BRADI3G34410 Brachypodium distachyon BRADI3G34410 I
Cagra.0751s0009 Capsella grandiflora Cagra.0751s0009 I
Cagra.3519s0026 Capsella grandiflora Cagra.3519s0026 I
Cagra.5070s0005 Capsella grandiflora Cagra.5070s0005 I
Carubv10000300m.g Capsella rubella Carubv10000300m.g I
Carubv10006895m.g Capsella rubella Carubv10006895m.g I
Carubv10028088m.g Capsella rubella Carubv10028088m.g I
cassava26453.m1 Manihot esculenta cassava26453.m1 I
cassava44056.valid.m1 Manihot esculenta cassava44056.valid.m1 I
Ciclev10003996m.g Citrus clementina Ciclev10003996m.g I
Cla016492 Citrullus lanatus Cla016492 I
Cucsa.312880 Cucumis sativus Cucsa.312880 I
Eucgr.D02223 Eucalyptus grandis Eucgr.D02223 I
F775_15827 Aegilops tauschii F775_15827 I
GLYMA01G01850 Glycine max GLYMA01G01850 I
GLYMA09G34061 Glycine max GLYMA09G34061 I
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I
Gorai.003G185000 Gossypium raimondii Gorai.003G185000 I
Gorai.010G177800 Gossypium raimondii Gorai.010G177800 I
GRMZM2G123140 Zea mays GRMZM2G123140 I
HDG5 Arabidopsis thaliana AT5G46880 I
LPERR10G15330 Leersia perrieri LPERR10G15330 I
Lus10006765.g Linum usitatissimum Lus10006765.g I
Lus10007650.g Linum usitatissimum Lus10007650.g I
Lus10018360.g Linum usitatissimum Lus10018360.g I
Lus10020059.g Linum usitatissimum Lus10020059.g I
MDP0000123097 Malus domestica MDP0000123097 I
mgf002757m Mimulus guttatus mgf002757m I
MLOC_52077 Hordeum vulgare MLOC_52077 I
OB10G26620 Oryza brachyantha OB10G26620 I
OBART10G19440 Oryza barthii OBART10G19440 I
OGLUM10G19540 Oryza glumaepatula OGLUM10G19540 I
OLONG_018774 Oryza longistaminata OLONG_018774 I
OLONG_026649 Oryza longistaminata OLONG_026649 I
OMERI10G15290 Oryza meridionalis OMERI10G15290 I
ONIVA10G22060 Oryza nivara ONIVA10G22060 I
OPUNC10G17890 Oryza punctata OPUNC10G17890 I
OPUNC10G17920 Oryza punctata OPUNC10G17920 I
ORGLA10G0146400 Oryza glaberrima ORGLA10G0146400 I
ORUFI10G20730 Oryza rufipogon ORUFI10G20730 I
Pavir.Ib03079 Panicum virgatum Pavir.Ib03079 I
Pavir.J05371 Panicum virgatum Pavir.J05371 I
PDF2 Arabidopsis thaliana AT4G04890 D
PGSC0003DMG400024068 Solanum tuberosum PGSC0003DMG400024068 I
Pm023161 Prunus mume Pm023161 I
POPTR_0001s02030 Populus trichocarpa POPTR_0001s02030 I
POPTR_0003s09470 Populus trichocarpa POPTR_0003s09470 I
POPTR_0004s01980 Populus trichocarpa POPTR_0004s01980 I
POPTR_0011s00520 Populus trichocarpa POPTR_0011s00520 I
PRUPE_ppa014792mg Prunus persica PRUPE_ppa014792mg I
ROC3 Oryza sativa OS10G0575600 I
SapurV1A.0051s0090 Salix purpurea SapurV1A.0051s0090 I
SapurV1A.0063s0030 Salix purpurea SapurV1A.0063s0030 I
SapurV1A.0722s0230 Salix purpurea SapurV1A.0722s0230 I
Sb01g028160 Sorghum bicolor Sb01g028160 I
Si034202m.g Setaria italica Si034202m.g I
TCM_016582 Theobroma cacao TCM_016582 I
TCM_030175 Theobroma cacao TCM_030175 I
Thhalv10000776m.g Eutrema salsugineum Thhalv10000776m.g I
Thhalv10024488m.g Eutrema salsugineum Thhalv10024488m.g I
Thhalv10028459m.g Eutrema salsugineum Thhalv10028459m.g I
TRIUR3_19363 Triticum urartu TRIUR3_19363 I
VIT_02s0012g02030 Vitis vinifera VIT_02s0012g02030 I
VIT_10s0116g00680 Vitis vinifera VIT_10s0116g00680 I